Analysis of interatomic Contacts of Structural Units in PDB entry:
2G8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2G8Y entry

There are 2 chains in PDB entry 2G8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3SER 361
B
 GLY 4SER 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2G8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 24Right-handed alpha
Helix 2
2
A
26 44Right-handed alpha
Helix 3
3
A
45 51Right-handed 310
Helix 4
4
A
52 62Right-handed alpha
Helix 5
5
A
89 109Right-handed alpha
Helix 6
6
A
123 134Right-handed alpha
Helix 7
7
A
187 198Right-handed alpha
Helix 8
8
A
216 221Right-handed 310
Helix 9
9
A
233 247Right-handed alpha
Helix 10
10
A
257 261Right-handed 310
Helix 11
11
A
279 282Right-handed 310
Helix 12
12
A
286 300Right-handed alpha
Helix 13
13
A
313 327Right-handed alpha
Helix 14
14
A
331 345Right-handed alpha
Helix 15
15
A
348 361Right-handed alpha
Helix 16
16
B
8 24Right-handed alpha
Helix 17
17
B
26 43Right-handed alpha
Helix 18
18
B
45 51Right-handed 310
Helix 19
19
B
52 62Right-handed alpha
Helix 20
20
B
89 109Right-handed alpha
Helix 21
21
B
123 134Right-handed alpha
Helix 22
22
B
187 197Right-handed alpha
Helix 23
23
B
217 222Right-handed alpha
Helix 24
24
B
233 247Right-handed alpha
Helix 25
25
B
257 261Right-handed 310
Helix 26
26
B
279 282Right-handed 310
Helix 27
27
B
286 300Right-handed alpha
Helix 28
28
B
313 327Right-handed alpha
Helix 29
29
B
331 345Right-handed alpha
Helix 30
30
B
348 361Right-handed alpha
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There are 6 sheets in PDB entry 2G8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
328 330anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 77first strand
Strand 2
A
80 84anti-parallel
Strand 3
A
110 119parallel
Strand 4
A
269 277anti-parallel
Strand 5
A
137 144anti-parallel
Strand 6
A
165 171anti-parallel
Strand 7
A
174 181anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
206 207anti-parallel
Strand 3
A
227 228anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
328 330anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 77first strand
Strand 2
B
80 84anti-parallel
Strand 3
B
110 119parallel
Strand 4
B
269 277anti-parallel
Strand 5
B
137 144anti-parallel
Strand 6
B
165 169anti-parallel
Strand 7
B
177 181anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
B
206 207anti-parallel
Strand 3
B
227 228anti-parallel
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