Analysis of interatomic Contacts of Structural Units in PDB entry:
2G9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2G9D entry

There is 1 chain in PDB entry 2G9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASP 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 2G9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 82Right-handed alpha
Helix 2
2
A
97 103Right-handed alpha
Helix 3
3
A
124 141Right-handed alpha
Helix 4
4
A
145 147Right-handed 310
Helix 5
5
A
178 188Right-handed alpha
Helix 6
6
A
202 212Right-handed alpha
Helix 7
7
A
234 247Right-handed alpha
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There are 2 sheets in PDB entry 2G9D. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
41 44anti-parallel
Strand 4
A
90 94anti-parallel
Strand 5
A
55 60parallel
Strand 6
A
149 157parallel
Strand 7
A
214 222parallel
Strand 8
A
166 169anti-parallel
Strand 9
A
192 195parallel
Strand 10
A
258 267parallel
Strand 11
A
322 329anti-parallel
Strand 12
A
309 311anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
339 341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il