Analysis of interatomic Contacts of Structural Units in PDB entry:
2G9Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2G9Z entry

There are 2 chains in PDB entry 2G9Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5VAL 326
B
 GLU 6ASP 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2G9Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 69Right-handed alpha
Helix 2
2
A
79 88Right-handed alpha
Helix 3
3
A
101 105Right-handed 310
Helix 4
4
A
118 127Right-handed alpha
Helix 5
5
A
141 157Right-handed alpha
Helix 6
6
A
171 183Right-handed alpha
Helix 7
7
A
203 221Right-handed alpha
Helix 8
8
A
249 253Right-handed 310
Helix 9
9
B
63 69Right-handed alpha
Helix 10
10
B
79 88Right-handed alpha
Helix 11
11
B
101 105Right-handed 310
Helix 12
12
B
118 127Right-handed alpha
Helix 13
13
B
141 157Right-handed alpha
Helix 14
14
B
171 183Right-handed alpha
Helix 15
15
B
203 221Right-handed alpha
Helix 16
16
B
249 253Right-handed 310
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There are 6 sheets in PDB entry 2G9Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
285 288anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
241 246parallel
Strand 3
A
309 314anti-parallel
Strand 4
A
276 281anti-parallel
Strand 5
A
290 292anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
109 112parallel
Strand 3
A
73 77parallel
Strand 4
A
51 55parallel
Strand 5
A
192 197parallel
Strand 6
A
224 229parallel
Strand 7
A
233 238anti-parallel
Strand 8
A
318 323anti-parallel
Strand 9
A
264 268anti-parallel
Strand 10
A
299 303anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
285 288anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
241 246parallel
Strand 3
B
309 314anti-parallel
Strand 4
B
276 281anti-parallel
Strand 5
B
290 292anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
109 112parallel
Strand 3
B
73 77parallel
Strand 4
B
51 55parallel
Strand 5
B
192 197parallel
Strand 6
B
224 229parallel
Strand 7
B
233 238anti-parallel
Strand 8
B
318 323anti-parallel
Strand 9
B
264 268anti-parallel
Strand 10
B
299 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il