Analysis of interatomic Contacts of Structural Units in PDB entry:
2GAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GAE entry

There is 1 chain in PDB entry 2GAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 24ALA 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2GAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 70Right-handed alpha
Helix 2
2
A
70 91Right-handed alpha
Helix 3
3
A
93 100Right-handed 310
Helix 4
4
A
152 159Right-handed alpha
Helix 5
5
A
172 183Right-handed alpha
Helix 6
6
A
210 217Right-handed alpha
Helix 7
7
A
222 226Right-handed 310
Helix 8
8
A
227 237Right-handed alpha
Helix 9
9
A
239 249Right-handed alpha
Helix 10
10
A
334 342Right-handed alpha
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There are 2 sheets in PDB entry 2GAE. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
102 107anti-parallel
Strand 3
A
346 355anti-parallel
Strand 4
A
290 298anti-parallel
Strand 5
A
304 317anti-parallel
Strand 6
A
277 279parallel
Strand 7
A
326 333anti-parallel
Strand 8
A
116 123parallel
Strand 9
A
346 355anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
125 129anti-parallel
Strand 4
A
185 188parallel
Strand 5
A
196 203anti-parallel
Strand 6
A
254 259anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il