Analysis of interatomic Contacts of Structural Units in PDB entry:
2GAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GAF entry

There are 2 chains in PDB entry 2GAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1PRO 297
D
 ASN 12PHE 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2GAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
36 56Right-handed alpha
Helix 3
3
A
74 84Right-handed alpha
Helix 4
4
A
100 104Right-handed 310
Helix 5
5
A
117 129Right-handed alpha
Helix 6
6
A
149 168Right-handed alpha
Helix 7
7
A
180 184Right-handed 310
Helix 8
8
A
225 242Right-handed alpha
Helix 9
9
A
243 246Right-handed 310
Helix 10
10
A
257 268Right-handed alpha
Helix 11
11
A
278 295Right-handed alpha
Helix 12
12
D
12 23Right-handed alpha
Helix 13
13
D
27 35Right-handed alpha
Helix 14
14
D
37 47Right-handed alpha
Helix 15
15
D
48 64Right-handed alpha
Helix 16
16
D
71 82Right-handed alpha
Helix 17
17
D
83 88Right-handed 310
Helix 18
18
D
90 112Right-handed alpha
Helix 19
19
D
134 146Right-handed alpha
Helix 20
20
D
164 179Right-handed alpha
Helix 21
21
D
187 193Right-handed alpha
Helix 22
22
D
209 225Right-handed alpha
Helix 23
23
D
258 265Right-handed alpha
Helix 24
24
D
277 289Right-handed alpha
Helix 25
25
D
291 301Right-handed alpha
Helix 26
26
D
302 321Right-handed alpha
Helix 27
27
D
362 373Right-handed alpha
Helix 28
28
D
382 385Right-handed 310
Helix 29
29
D
413 431Right-handed alpha
Helix 30
30
D
436 445Right-handed alpha
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There are 6 sheets in PDB entry 2GAF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 113first strand
Strand 2
A
89 95parallel
Strand 3
A
62 67parallel
Strand 4
A
133 137parallel
Strand 5
A
171 176parallel
Strand 6
A
208 213anti-parallel
Strand 7
A
194 196anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
221 224anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 186first strand
Strand 2
D
204 207anti-parallel
Strand 3
D
250 256parallel
Strand 4
D
240 245anti-parallel
Strand 5
D
229 233anti-parallel
Strand 6
D
468 471anti-parallel
Strand 7
D
476 478anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
267 270first strand
Strand 2
D
273 276anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
335 337first strand
Strand 2
D
343 347anti-parallel
Strand 3
D
356 360anti-parallel
Strand 4
D
396 399parallel
Strand 5
D
388 391anti-parallel
Strand 6
D
379 380anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
405 406first strand
Strand 2
D
456 457anti-parallel
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