Analysis of interatomic Contacts of Structural Units in PDB entry:
2GAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GAJ entry

There are 2 chains in PDB entry 2GAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7LEU 601
B
 LYS 7LEU 601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 2GAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
26 28Right-handed 310
Helix 3
3
A
63 77Right-handed alpha
Helix 4
4
A
86 100Right-handed alpha
Helix 5
5
A
115 123Right-handed alpha
Helix 6
6
A
130 160Right-handed alpha
Helix 7
7
A
165 185Right-handed alpha
Helix 8
8
A
214 223Right-handed alpha
Helix 9
9
A
246 259Right-handed alpha
Helix 10
10
A
261 275Right-handed alpha
Helix 11
11
A
297 312Right-handed alpha
Helix 12
12
A
313 317Right-handed 310
Helix 13
13
A
345 350Right-handed alpha
Helix 14
14
A
354 372Right-handed alpha
Helix 15
15
A
404 409Right-handed 310
Helix 16
16
A
446 458Right-handed alpha
Helix 17
17
A
464 475Right-handed alpha
Helix 18
18
A
488 502Right-handed alpha
Helix 19
19
A
507 523Right-handed alpha
Helix 20
20
A
527 543Right-handed alpha
Helix 21
21
B
13 25Right-handed alpha
Helix 22
22
B
63 77Right-handed alpha
Helix 23
23
B
86 100Right-handed alpha
Helix 24
24
B
115 125Right-handed alpha
Helix 25
25
B
130 160Right-handed alpha
Helix 26
26
B
165 186Right-handed alpha
Helix 27
27
B
214 223Right-handed alpha
Helix 28
28
B
246 259Right-handed alpha
Helix 29
29
B
261 275Right-handed alpha
Helix 30
30
B
297 312Right-handed alpha
Helix 31
31
B
313 317Right-handed 310
Helix 32
32
B
345 350Right-handed alpha
Helix 33
33
B
354 372Right-handed alpha
Helix 34
34
B
404 409Right-handed 310
Helix 35
35
B
446 458Right-handed alpha
Helix 36
36
B
464 475Right-handed alpha
Helix 37
37
B
488 502Right-handed alpha
Helix 38
38
B
507 523Right-handed alpha
Helix 39
39
B
527 541Right-handed alpha
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There are 16 sheets in PDB entry 2GAJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
8 11parallel
Strand 3
A
79 81parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
58 59anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
54 55anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 427first strand
Strand 2
A
227 239anti-parallel
Strand 3
A
376 386anti-parallel
Strand 4
A
393 403anti-parallel
Strand 5
A
201 205anti-parallel
Strand 6
A
190 198anti-parallel
Strand 7
A
431 438anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
282 283anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 481first strand
Strand 2
A
484 487anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 558first strand
Strand 2
A
564 570anti-parallel
Strand 3
A
573 577anti-parallel
Strand 4
A
584 585anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 595first strand
Strand 2
A
598 600anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
8 11parallel
Strand 3
B
79 81parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
58 59anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
54 55anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
426 427first strand
Strand 2
B
227 239anti-parallel
Strand 3
B
376 386anti-parallel
Strand 4
B
393 403anti-parallel
Strand 5
B
201 205anti-parallel
Strand 6
B
190 198anti-parallel
Strand 7
B
431 438anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 277first strand
Strand 2
B
282 283anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
478 481first strand
Strand 2
B
484 487anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
553 558first strand
Strand 2
B
564 570anti-parallel
Strand 3
B
573 577anti-parallel
Strand 4
B
584 585anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
593 595first strand
Strand 2
B
598 600anti-parallel
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