Analysis of interatomic Contacts of Structural Units in PDB entry:
2GAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GAM entry

There are 4 chains in PDB entry 2GAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 56GLU 424
B
 ASN 56GLU 424
C
 ARG 44GLU 424
D
 HIS 45GLU 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 2GAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 64Right-handed alpha
Helix 2
2
A
66 79Right-handed alpha
Helix 3
3
A
89 97Right-handed alpha
Helix 4
4
A
99 108Right-handed alpha
Helix 5
5
A
115 120Right-handed alpha
Helix 6
6
A
132 144Right-handed alpha
Helix 7
7
A
159 172Right-handed alpha
Helix 8
8
A
189 207Right-handed alpha
Helix 9
9
A
225 236Right-handed alpha
Helix 10
10
A
248 251Right-handed 310
Helix 11
11
A
252 256Right-handed alpha
Helix 12
12
A
293 302Right-handed alpha
Helix 13
13
A
302 313Right-handed alpha
Helix 14
14
A
317 320Right-handed 310
Helix 15
15
A
321 327Right-handed alpha
Helix 16
16
A
339 343Right-handed 310
Helix 17
17
A
362 366Right-handed 310
Helix 18
18
A
384 386Right-handed 310
Helix 19
19
A
387 392Right-handed alpha
Helix 20
20
A
407 423Right-handed alpha
Helix 21
21
B
58 63Right-handed alpha
Helix 22
22
B
66 74Right-handed alpha
Helix 23
23
B
89 97Right-handed alpha
Helix 24
24
B
99 107Right-handed alpha
Helix 25
25
B
115 120Right-handed alpha
Helix 26
26
B
132 144Right-handed alpha
Helix 27
27
B
159 171Right-handed alpha
Helix 28
28
B
189 206Right-handed alpha
Helix 29
29
B
225 236Right-handed alpha
Helix 30
30
B
248 251Right-handed 310
Helix 31
31
B
252 256Right-handed alpha
Helix 32
32
B
293 302Right-handed alpha
Helix 33
33
B
302 313Right-handed alpha
Helix 34
34
B
317 320Right-handed 310
Helix 35
35
B
321 327Right-handed alpha
Helix 36
36
B
339 343Right-handed 310
Helix 37
37
B
356 360Right-handed 310
Helix 38
38
B
387 392Right-handed alpha
Helix 39
39
B
407 424Right-handed alpha
Helix 40
40
C
58 65Right-handed alpha
Helix 41
41
C
66 77Right-handed alpha
Helix 42
42
C
79 84Right-handed alpha
Helix 43
43
C
89 97Right-handed alpha
Helix 44
44
C
99 107Right-handed alpha
Helix 45
45
C
115 120Right-handed alpha
Helix 46
46
C
132 144Right-handed alpha
Helix 47
47
C
159 171Right-handed alpha
Helix 48
48
C
189 205Right-handed alpha
Helix 49
49
C
225 236Right-handed alpha
Helix 50
50
C
248 255Right-handed 310
Helix 51
51
C
293 302Right-handed alpha
Helix 52
52
C
302 313Right-handed alpha
Helix 53
53
C
317 320Right-handed 310
Helix 54
54
C
321 327Right-handed alpha
Helix 55
55
C
339 343Right-handed 310
Helix 56
56
C
362 366Right-handed 310
Helix 57
57
C
384 386Right-handed 310
Helix 58
58
C
387 392Right-handed alpha
Helix 59
59
C
407 423Right-handed alpha
Helix 60
60
D
58 63Right-handed alpha
Helix 61
61
D
66 78Right-handed alpha
Helix 62
62
D
89 99Right-handed alpha
Helix 63
63
D
99 108Right-handed alpha
Helix 64
64
D
132 144Right-handed alpha
Helix 65
65
D
159 172Right-handed alpha
Helix 66
66
D
189 207Right-handed alpha
Helix 67
67
D
225 236Right-handed alpha
Helix 68
68
D
248 251Right-handed 310
Helix 69
69
D
252 256Right-handed alpha
Helix 70
70
D
293 302Right-handed alpha
Helix 71
71
D
302 313Right-handed alpha
Helix 72
72
D
317 320Right-handed 310
Helix 73
73
D
321 327Right-handed alpha
Helix 74
74
D
339 343Right-handed 310
Helix 75
75
D
362 366Right-handed 310
Helix 76
76
D
386 392Right-handed alpha
Helix 77
77
D
408 424Right-handed alpha
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There are 20 sheets in PDB entry 2GAM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
149 154parallel
Strand 3
A
123 129parallel
Strand 4
A
212 217parallel
Strand 5
A
290 292anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
398 399anti-parallel
Strand 3
A
352 353parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
283 284anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 262first strand
Strand 2
A
265 272anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
380 382anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
149 154parallel
Strand 3
B
123 129parallel
Strand 4
B
212 217parallel
Strand 5
B
290 292anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 222first strand
Strand 2
B
398 400anti-parallel
Strand 3
B
352 353parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
283 285anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 261first strand
Strand 2
B
266 272anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 377first strand
Strand 2
B
380 382anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 178first strand
Strand 2
C
149 154parallel
Strand 3
C
124 129parallel
Strand 4
C
212 217parallel
Strand 5
C
290 292anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
221 222first strand
Strand 2
C
398 399anti-parallel
Strand 3
C
352 353parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
245 246first strand
Strand 2
C
283 284anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 262first strand
Strand 2
C
265 272anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
375 377first strand
Strand 2
C
380 382anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
176 178first strand
Strand 2
D
149 154parallel
Strand 3
D
123 129parallel
Strand 4
D
212 217parallel
Strand 5
D
290 292anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
220 222first strand
Strand 2
D
398 400anti-parallel
Strand 3
D
352 353parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
245 246first strand
Strand 2
D
283 284anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
257 262first strand
Strand 2
D
265 272anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
375 377first strand
Strand 2
D
380 382anti-parallel
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