Analysis of interatomic Contacts of Structural Units in PDB entry:
2GBW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GBW entry

There are 6 chains in PDB entry 2GBW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	GLU 454
B	GLN 5	CYS 174
C	THR 6	ASN 451
D	GLN 5	CYS 174
E	THR 6	GLU 454
F	GLN 5	CYS 174

There are 75 helices in PDB entry 2GBW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	18	21	Right-handed 310
Helix 2	2	A	22	33	Right-handed alpha
Helix 3	3	A	45	47	Right-handed 310
Helix 4	4	A	128	132	Right-handed 310
Helix 5	5	A	156	162	Right-handed alpha
Helix 6	6	A	164	173	Right-handed alpha
Helix 7	7	A	194	204	Right-handed alpha
Helix 8	8	A	207	212	Right-handed alpha
Helix 9	9	A	212	220	Right-handed alpha
Helix 10	10	A	221	227	Right-handed 310
Helix 11	11	A	234	237	Right-handed 310
Helix 12	12	A	264	283	Right-handed alpha
Helix 13	13	A	283	292	Right-handed alpha
Helix 14	14	A	335	351	Right-handed alpha
Helix 15	15	A	356	359	Right-handed 310
Helix 16	16	A	360	370	Right-handed alpha
Helix 17	17	A	373	378	Right-handed alpha
Helix 18	18	A	407	423	Right-handed alpha
Helix 19	19	A	425	431	Right-handed alpha
Helix 20	20	A	435	440	Right-handed 310
Helix 21	21	A	444	453	Right-handed alpha
Helix 22	22	B	9	29	Right-handed alpha
Helix 23	23	B	31	39	Right-handed alpha
Helix 24	24	B	74	85	Right-handed alpha
Helix 25	25	B	90	94	Right-handed 310
Helix 26	26	C	18	21	Right-handed 310
Helix 27	27	C	22	33	Right-handed alpha
Helix 28	28	C	45	47	Right-handed 310
Helix 29	29	C	128	132	Right-handed 310
Helix 30	30	C	156	162	Right-handed alpha
Helix 31	31	C	163	173	Right-handed alpha
Helix 32	32	C	194	204	Right-handed alpha
Helix 33	33	C	204	212	Right-handed alpha
Helix 34	34	C	212	220	Right-handed alpha
Helix 35	35	C	221	227	Right-handed 310
Helix 36	36	C	234	237	Right-handed 310
Helix 37	37	C	264	283	Right-handed alpha
Helix 38	38	C	283	291	Right-handed alpha
Helix 39	39	C	335	351	Right-handed alpha
Helix 40	40	C	356	359	Right-handed 310
Helix 41	41	C	360	370	Right-handed alpha
Helix 42	42	C	373	378	Right-handed alpha
Helix 43	43	C	407	423	Right-handed alpha
Helix 44	44	C	425	431	Right-handed alpha
Helix 45	45	C	432	440	Right-handed 310
Helix 46	46	C	444	451	Right-handed alpha
Helix 47	47	D	9	29	Right-handed alpha
Helix 48	48	D	31	39	Right-handed alpha
Helix 49	49	D	74	86	Right-handed alpha
Helix 50	50	D	90	94	Right-handed 310
Helix 51	51	E	18	21	Right-handed 310
Helix 52	52	E	22	33	Right-handed alpha
Helix 53	53	E	45	47	Right-handed 310
Helix 54	54	E	128	133	Right-handed 310
Helix 55	55	E	156	162	Right-handed alpha
Helix 56	56	E	164	173	Right-handed alpha
Helix 57	57	E	194	204	Right-handed alpha
Helix 58	58	E	207	212	Right-handed alpha
Helix 59	59	E	212	220	Right-handed alpha
Helix 60	60	E	222	227	Right-handed 310
Helix 61	61	E	234	238	Right-handed alpha
Helix 62	62	E	264	283	Right-handed alpha
Helix 63	63	E	283	291	Right-handed alpha
Helix 64	64	E	335	351	Right-handed alpha
Helix 65	65	E	356	359	Right-handed 310
Helix 66	66	E	360	370	Right-handed alpha
Helix 67	67	E	373	378	Right-handed alpha
Helix 68	68	E	407	423	Right-handed alpha
Helix 69	69	E	425	431	Right-handed alpha
Helix 70	70	E	435	440	Right-handed 310
Helix 71	71	E	444	453	Right-handed alpha
Helix 72	72	F	9	30	Right-handed alpha
Helix 73	73	F	31	39	Right-handed alpha
Helix 74	74	F	74	87	Right-handed alpha
Helix 75	75	F	90	94	Right-handed 310

There are 15 sheets in PDB entry 2GBW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	14	16	anti-parallel
Strand 3	A	380	382	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	145	149	anti-parallel
Strand 3	A	136	142	anti-parallel
Strand 4	A	73	77	anti-parallel
Strand 5	A	61	67	anti-parallel
Strand 6	A	52	58	anti-parallel
Strand 7	A	92	94	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	106	108	anti-parallel
Strand 3	A	113	115	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	190	first strand
Strand 2	A	322	331	anti-parallel
Strand 3	A	310	316	anti-parallel
Strand 4	A	302	306	anti-parallel
Strand 5	A	293	298	anti-parallel
Strand 6	A	249	253	anti-parallel
Strand 7	A	239	243	anti-parallel
Strand 8	A	399	401	anti-parallel
Strand 9	A	390	391	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	98	112	anti-parallel
Strand 3	B	115	128	anti-parallel
Strand 4	B	132	147	anti-parallel
Strand 5	B	150	160	anti-parallel
Strand 6	B	40	49	parallel
Strand 7	B	69	73	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	C	14	16	anti-parallel
Strand 3	C	380	382	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	145	149	anti-parallel
Strand 3	C	136	142	anti-parallel
Strand 4	C	73	77	anti-parallel
Strand 5	C	61	67	anti-parallel
Strand 6	C	52	58	anti-parallel
Strand 7	C	92	94	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	106	107	anti-parallel
Strand 3	C	113	115	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	190	first strand
Strand 2	C	322	331	anti-parallel
Strand 3	C	310	316	anti-parallel
Strand 4	C	302	306	anti-parallel
Strand 5	C	293	298	anti-parallel
Strand 6	C	249	253	anti-parallel
Strand 7	C	239	243	anti-parallel
Strand 8	C	399	401	anti-parallel
Strand 9	C	390	391	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	73	first strand
Strand 2	D	40	49	anti-parallel
Strand 3	D	150	160	parallel
Strand 4	D	132	147	anti-parallel
Strand 5	D	115	128	anti-parallel
Strand 6	D	98	110	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	9	first strand
Strand 2	E	14	16	anti-parallel
Strand 3	E	380	382	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	43	first strand
Strand 2	E	145	149	anti-parallel
Strand 3	E	136	142	anti-parallel
Strand 4	E	73	77	anti-parallel
Strand 5	E	61	67	anti-parallel
Strand 6	E	52	58	anti-parallel
Strand 7	E	92	94	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	99	first strand
Strand 2	E	106	108	anti-parallel
Strand 3	E	113	115	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	190	first strand
Strand 2	E	322	331	anti-parallel
Strand 3	E	310	316	anti-parallel
Strand 4	E	302	306	anti-parallel
Strand 5	E	293	298	anti-parallel
Strand 6	E	249	253	anti-parallel
Strand 7	E	239	243	anti-parallel
Strand 8	E	399	401	anti-parallel
Strand 9	E	390	391	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	98	110	anti-parallel
Strand 3	F	115	128	anti-parallel
Strand 4	F	132	147	anti-parallel
Strand 5	F	150	160	anti-parallel
Strand 6	F	40	49	parallel
Strand 7	F	69	73	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GBW

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GBW