Analysis of interatomic Contacts of Structural Units in PDB entry:
2GCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GCE entry

There are 4 chains in PDB entry 2GCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 360
B
 ALA 2GLY 360
C
 ALA 2GLY 360
D
 ALA 2GLY 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 2GCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 29Right-handed alpha
Helix 2
2
A
48 52Right-handed 310
Helix 3
3
A
63 75Right-handed alpha
Helix 4
4
A
87 93Right-handed alpha
Helix 5
5
A
95 103Right-handed alpha
Helix 6
6
A
126 133Right-handed alpha
Helix 7
7
A
136 140Right-handed 310
Helix 8
8
A
160 179Right-handed alpha
Helix 9
9
A
188 196Right-handed alpha
Helix 10
10
A
196 204Right-handed alpha
Helix 11
11
A
241 253Right-handed alpha
Helix 12
12
A
255 259Right-handed 310
Helix 13
13
A
264 266Right-handed 310
Helix 14
14
A
267 280Right-handed alpha
Helix 15
15
A
283 291Right-handed alpha
Helix 16
16
A
303 309Right-handed 310
Helix 17
17
A
310 316Right-handed alpha
Helix 18
18
A
350 359Right-handed alpha
Helix 19
19
B
17 29Right-handed alpha
Helix 20
20
B
48 52Right-handed 310
Helix 21
21
B
63 75Right-handed alpha
Helix 22
22
B
87 93Right-handed alpha
Helix 23
23
B
95 103Right-handed alpha
Helix 24
24
B
126 133Right-handed alpha
Helix 25
25
B
136 140Right-handed 310
Helix 26
26
B
160 179Right-handed alpha
Helix 27
27
B
188 196Right-handed alpha
Helix 28
28
B
196 205Right-handed alpha
Helix 29
29
B
241 253Right-handed alpha
Helix 30
30
B
255 259Right-handed 310
Helix 31
31
B
264 266Right-handed 310
Helix 32
32
B
267 281Right-handed alpha
Helix 33
33
B
283 291Right-handed alpha
Helix 34
34
B
303 308Right-handed alpha
Helix 35
35
B
310 316Right-handed alpha
Helix 36
36
B
350 359Right-handed alpha
Helix 37
37
C
17 29Right-handed alpha
Helix 38
38
C
48 52Right-handed 310
Helix 39
39
C
63 75Right-handed alpha
Helix 40
40
C
87 93Right-handed alpha
Helix 41
41
C
95 103Right-handed alpha
Helix 42
42
C
126 134Right-handed alpha
Helix 43
43
C
136 140Right-handed 310
Helix 44
44
C
160 179Right-handed alpha
Helix 45
45
C
188 196Right-handed alpha
Helix 46
46
C
196 205Right-handed alpha
Helix 47
47
C
241 253Right-handed alpha
Helix 48
48
C
255 259Right-handed 310
Helix 49
49
C
264 266Right-handed 310
Helix 50
50
C
267 280Right-handed alpha
Helix 51
51
C
283 291Right-handed alpha
Helix 52
52
C
303 309Right-handed 310
Helix 53
53
C
310 316Right-handed alpha
Helix 54
54
C
350 358Right-handed alpha
Helix 55
55
D
17 29Right-handed alpha
Helix 56
56
D
48 52Right-handed 310
Helix 57
57
D
63 75Right-handed alpha
Helix 58
58
D
87 93Right-handed alpha
Helix 59
59
D
95 101Right-handed alpha
Helix 60
60
D
126 133Right-handed alpha
Helix 61
61
D
136 140Right-handed 310
Helix 62
62
D
160 179Right-handed alpha
Helix 63
63
D
188 196Right-handed alpha
Helix 64
64
D
196 205Right-handed alpha
Helix 65
65
D
241 253Right-handed alpha
Helix 66
66
D
255 259Right-handed 310
Helix 67
67
D
264 266Right-handed 310
Helix 68
68
D
267 281Right-handed alpha
Helix 69
69
D
283 291Right-handed alpha
Helix 70
70
D
303 308Right-handed alpha
Helix 71
71
D
310 316Right-handed alpha
Helix 72
72
D
350 359Right-handed alpha
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There are 12 sheets in PDB entry 2GCE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
32 37parallel
Strand 3
A
9 13parallel
Strand 4
A
79 82parallel
Strand 5
A
107 112parallel
Strand 6
A
182 187parallel
Strand 7
B
333 334anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
298 300anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
325 328anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
B
182 187anti-parallel
Strand 3
B
107 112parallel
Strand 4
B
79 82parallel
Strand 5
B
9 13parallel
Strand 6
B
32 37parallel
Strand 7
B
55 58parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 228first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
298 300anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 321first strand
Strand 2
B
326 328anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 58first strand
Strand 2
C
32 37parallel
Strand 3
C
9 13parallel
Strand 4
C
79 82parallel
Strand 5
C
107 112parallel
Strand 6
C
183 187parallel
Strand 7
D
333 334anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 228first strand
Strand 2
C
234 238anti-parallel
Strand 3
C
298 300anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
319 321first strand
Strand 2
C
326 328anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
333 334first strand
Strand 2
D
182 187anti-parallel
Strand 3
D
107 112parallel
Strand 4
D
79 82parallel
Strand 5
D
9 13parallel
Strand 6
D
32 37parallel
Strand 7
D
55 58parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
224 228first strand
Strand 2
D
234 238anti-parallel
Strand 3
D
298 300anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
319 322first strand
Strand 2
D
325 328anti-parallel
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