Analysis of interatomic Contacts of Structural Units in PDB entry:
2GDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GDQ entry

There are 2 chains in PDB entry 2GDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLU 375
B
 LEU 3GLU 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2GDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 65Right-handed alpha
Helix 2
2
A
65 71Right-handed alpha
Helix 3
3
A
77 89Right-handed alpha
Helix 4
4
A
89 108Right-handed alpha
Helix 5
5
A
111 116Right-handed alpha
Helix 6
6
A
138 152Right-handed alpha
Helix 7
7
A
166 182Right-handed alpha
Helix 8
8
A
196 202Right-handed alpha
Helix 9
9
A
203 208Right-handed alpha
Helix 10
10
A
224 233Right-handed alpha
Helix 11
11
A
247 257Right-handed alpha
Helix 12
12
A
271 287Right-handed alpha
Helix 13
13
A
298 310Right-handed alpha
Helix 14
14
A
332 338Right-handed 310
Helix 15
15
A
360 367Right-handed alpha
Helix 16
16
B
54 65Right-handed alpha
Helix 17
17
B
65 71Right-handed alpha
Helix 18
18
B
77 87Right-handed alpha
Helix 19
19
B
89 108Right-handed alpha
Helix 20
20
B
111 116Right-handed alpha
Helix 21
21
B
138 153Right-handed alpha
Helix 22
22
B
166 182Right-handed alpha
Helix 23
23
B
196 202Right-handed alpha
Helix 24
24
B
203 208Right-handed alpha
Helix 25
25
B
224 233Right-handed alpha
Helix 26
26
B
247 257Right-handed alpha
Helix 27
27
B
272 287Right-handed alpha
Helix 28
28
B
298 310Right-handed alpha
Helix 29
29
B
332 337Right-handed 310
Helix 30
30
B
360 367Right-handed alpha
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There are 6 sheets in PDB entry 2GDQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 24first strand
Strand 2
A
27 41anti-parallel
Strand 3
A
46 51anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
262 263parallel
Strand 3
A
239 241parallel
Strand 4
A
213 217parallel
Strand 5
A
186 190parallel
Strand 6
A
157 161parallel
Strand 7
A
123 129parallel
Strand 8
A
325 328parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
262 263parallel
Strand 3
A
239 241parallel
Strand 4
A
213 217parallel
Strand 5
A
186 190parallel
Strand 6
A
157 161parallel
Strand 7
A
123 129parallel
Strand 8
A
346 348anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 24first strand
Strand 2
B
27 41anti-parallel
Strand 3
B
46 51anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 290first strand
Strand 2
B
262 263parallel
Strand 3
B
239 241parallel
Strand 4
B
213 217parallel
Strand 5
B
186 190parallel
Strand 6
B
157 161parallel
Strand 7
B
123 129parallel
Strand 8
B
325 328parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 290first strand
Strand 2
B
262 263parallel
Strand 3
B
239 241parallel
Strand 4
B
213 217parallel
Strand 5
B
186 190parallel
Strand 6
B
157 161parallel
Strand 7
B
123 129parallel
Strand 8
B
346 348anti-parallel
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