Analysis of interatomic Contacts of Structural Units in PDB entry:
2GDR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GDR entry

There are 6 chains in PDB entry 2GDR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 202
B	MET 1	ILE 201
C	MET 1	LYS 202
D	MET 1	ILE 201
E	MET 1	LYS 202
F	MET 1	ILE 201

There are 64 helices in PDB entry 2GDR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	22	Right-handed alpha
Helix 2	2	A	42	46	Right-handed 310
Helix 3	3	A	65	75	Right-handed alpha
Helix 4	4	A	88	105	Right-handed alpha
Helix 5	5	A	106	108	Right-handed 310
Helix 6	6	A	109	114	Right-handed alpha
Helix 7	7	A	118	143	Right-handed alpha
Helix 8	8	A	152	165	Right-handed alpha
Helix 9	9	A	166	169	Right-handed 310
Helix 10	10	A	175	186	Right-handed alpha
Helix 11	11	A	188	198	Right-handed alpha
Helix 12	12	B	11	21	Right-handed alpha
Helix 13	13	B	42	47	Right-handed alpha
Helix 14	14	B	65	77	Right-handed alpha
Helix 15	15	B	78	81	Right-handed 310
Helix 16	16	B	88	105	Right-handed alpha
Helix 17	17	B	105	113	Right-handed alpha
Helix 18	18	B	118	140	Right-handed alpha
Helix 19	19	B	152	163	Right-handed alpha
Helix 20	20	B	164	166	Right-handed 310
Helix 21	21	B	175	187	Right-handed alpha
Helix 22	22	B	188	198	Right-handed alpha
Helix 23	23	C	11	22	Right-handed alpha
Helix 24	24	C	42	47	Right-handed alpha
Helix 25	25	C	65	77	Right-handed alpha
Helix 26	26	C	78	81	Right-handed 310
Helix 27	27	C	88	105	Right-handed alpha
Helix 28	28	C	105	114	Right-handed alpha
Helix 29	29	C	118	140	Right-handed alpha
Helix 30	30	C	152	165	Right-handed alpha
Helix 31	31	C	175	187	Right-handed alpha
Helix 32	32	C	188	198	Right-handed alpha
Helix 33	33	D	11	22	Right-handed alpha
Helix 34	34	D	42	47	Right-handed alpha
Helix 35	35	D	65	77	Right-handed alpha
Helix 36	36	D	78	81	Right-handed 310
Helix 37	37	D	88	105	Right-handed alpha
Helix 38	38	D	105	114	Right-handed alpha
Helix 39	39	D	118	140	Right-handed alpha
Helix 40	40	D	152	163	Right-handed alpha
Helix 41	41	D	175	187	Right-handed alpha
Helix 42	42	D	188	198	Right-handed alpha
Helix 43	43	E	11	22	Right-handed alpha
Helix 44	44	E	42	46	Right-handed 310
Helix 45	45	E	65	76	Right-handed alpha
Helix 46	46	E	77	81	Right-handed 310
Helix 47	47	E	88	105	Right-handed alpha
Helix 48	48	E	105	110	Right-handed alpha
Helix 49	49	E	111	114	Right-handed 310
Helix 50	50	E	118	143	Right-handed alpha
Helix 51	51	E	152	164	Right-handed alpha
Helix 52	52	E	165	169	Right-handed 310
Helix 53	53	E	175	187	Right-handed alpha
Helix 54	54	E	188	198	Right-handed alpha
Helix 55	55	F	11	22	Right-handed alpha
Helix 56	56	F	42	46	Right-handed 310
Helix 57	57	F	65	77	Right-handed alpha
Helix 58	58	F	78	81	Right-handed 310
Helix 59	59	F	88	105	Right-handed alpha
Helix 60	60	F	105	113	Right-handed alpha
Helix 61	61	F	118	140	Right-handed alpha
Helix 62	62	F	152	163	Right-handed alpha
Helix 63	63	F	175	187	Right-handed alpha
Helix 64	64	F	188	198	Right-handed alpha

There are 6 sheets in PDB entry 2GDR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	54	56	anti-parallel
Strand 3	A	2	5	anti-parallel
Strand 4	A	25	29	parallel
Strand 5	D	26	31	parallel
Strand 6	D	36	37	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	54	56	anti-parallel
Strand 3	A	2	5	anti-parallel
Strand 4	A	25	29	parallel
Strand 5	D	26	31	parallel
Strand 6	D	2	5	parallel
Strand 7	D	54	56	anti-parallel
Strand 8	D	62	64	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	26	31	anti-parallel
Strand 3	B	2	5	parallel
Strand 4	B	54	56	anti-parallel
Strand 5	B	62	64	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	2	5	parallel
Strand 3	C	54	56	anti-parallel
Strand 4	C	62	64	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	37	first strand
Strand 2	E	26	31	anti-parallel
Strand 3	E	2	5	parallel
Strand 4	E	54	56	anti-parallel
Strand 5	E	62	64	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	37	first strand
Strand 2	F	26	31	anti-parallel
Strand 3	F	2	5	parallel
Strand 4	F	54	56	anti-parallel
Strand 5	F	62	64	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GDR

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GDR