Analysis of interatomic Contacts of Structural Units in PDB entry:
2GE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GE5 entry

There are 4 chains in PDB entry 2GE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 1 T 11
D
 A 1 T 11
A
 SER 2GLU 220
B
 SER 2GLU 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2GE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
36 59Right-handed alpha
Helix 3
3
A
124 126Right-handed 310
Helix 4
4
A
144 149Right-handed 310
Helix 5
5
A
154 159Right-handed 310
Helix 6
6
A
195 202Right-handed alpha
Helix 7
7
A
208 217Right-handed alpha
Helix 8
8
B
2 17Right-handed alpha
Helix 9
9
B
36 59Right-handed alpha
Helix 10
10
B
124 126Right-handed 310
Helix 11
11
B
154 159Right-handed 310
Helix 12
12
B
173 176Right-handed alpha
Helix 13
13
B
195 201Right-handed alpha
Helix 14
14
B
208 218Right-handed alpha
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There are 5 sheets in PDB entry 2GE5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
29 31anti-parallel
Strand 3
A
20 25anti-parallel
Strand 4
B
20 25anti-parallel
Strand 5
B
29 32anti-parallel
Strand 6
B
151 152anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
75 79anti-parallel
Strand 3
A
82 96anti-parallel
Strand 4
A
128 139parallel
Strand 5
A
167 172anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
188 191anti-parallel
Strand 3
A
177 181anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
75 78anti-parallel
Strand 3
B
86 96anti-parallel
Strand 4
B
128 139parallel
Strand 5
B
167 172anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 109first strand
Strand 2
B
188 191anti-parallel
Strand 3
B
177 181anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il