Analysis of interatomic Contacts of Structural Units in PDB entry:
2GED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GED entry

There are 2 chains in PDB entry 2GED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 210ARG 182
B
 PHE 212ARG 182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2GED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
213 217Right-handed 310
Helix 2
2
A
233 244Right-handed alpha
Helix 3
3
A
50 61Right-handed alpha
Helix 4
4
A
97 106Right-handed alpha
Helix 5
5
A
121 143Right-handed alpha
Helix 6
6
A
163 181Right-handed alpha
Helix 7
7
B
213 217Right-handed 310
Helix 8
8
B
233 244Right-handed alpha
Helix 9
9
B
50 59Right-handed alpha
Helix 10
10
B
97 106Right-handed alpha
Helix 11
11
B
121 143Right-handed alpha
Helix 12
12
B
163 180Right-handed alpha
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There are 2 sheets in PDB entry 2GED. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 225first strand
Strand 2
A
149 154parallel
Strand 3
A
109 117parallel
Strand 4
A
40 44parallel
Strand 5
B
85 88anti-parallel
Strand 6
B
93 94anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
B
40 44anti-parallel
Strand 3
B
109 117parallel
Strand 4
B
149 154parallel
Strand 5
B
221 225parallel
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