Analysis of interatomic Contacts of Structural Units in PDB entry:
2GEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GEF entry

There are 2 chains in PDB entry 2GEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 559SER 769
B
 ASP 559ARG 773
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2GEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
611 615Right-handed 310
Helix 2
2
A
616 621Right-handed alpha
Helix 3
3
A
693 703Right-handed alpha
Helix 4
4
A
725 735Right-handed alpha
Helix 5
5
A
755 766Right-handed alpha
Helix 6
6
B
616 621Right-handed alpha
Helix 7
7
B
693 703Right-handed alpha
Helix 8
8
B
725 736Right-handed alpha
Helix 9
9
B
755 767Right-handed alpha
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There are 9 sheets in PDB entry 2GEF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 594first strand
Strand 2
B
599 608anti-parallel
Strand 3
B
660 670anti-parallel
Strand 4
B
676 682anti-parallel
Strand 5
B
576 583anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 594first strand
Strand 2
A
599 608anti-parallel
Strand 3
A
562 571parallel
Strand 4
B
562 571anti-parallel
Strand 5
B
599 608parallel
Strand 6
B
660 670anti-parallel
Strand 7
B
631 633parallel
Strand 8
B
623 625anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 594first strand
Strand 2
A
599 608anti-parallel
Strand 3
A
660 670anti-parallel
Strand 4
A
631 633parallel
Strand 5
A
623 625anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 583first strand
Strand 2
A
676 682anti-parallel
Strand 3
A
660 670anti-parallel
Strand 4
A
631 633parallel
Strand 5
A
623 625anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 636first strand
Strand 2
A
688 689parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 712first strand
Strand 2
A
740 742parallel
Strand 3
A
751 752parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 716first strand
Strand 2
A
719 721anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
710 712first strand
Strand 2
B
740 742parallel
Strand 3
B
751 752parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
714 716first strand
Strand 2
B
719 721anti-parallel
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