Analysis of interatomic Contacts of Structural Units in PDB entry:
2GER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GER entry

There are 5 chains in PDB entry 2GER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG -1GLU 275
B
 ARG -1GLU 275
C
 ARG -1GLU 275
D
 ARG -1GLU 275
E
 ARG -1GLU 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 2GER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 22Right-handed alpha
Helix 2
2
A
40 49Right-handed alpha
Helix 3
3
A
57 63Right-handed alpha
Helix 4
4
A
75 80Right-handed alpha
Helix 5
5
A
100 106Right-handed alpha
Helix 6
6
A
123 128Right-handed 310
Helix 7
7
A
144 155Right-handed alpha
Helix 8
8
A
163 165Right-handed 310
Helix 9
9
A
166 194Right-handed alpha
Helix 10
10
A
198 219Right-handed alpha
Helix 11
11
A
223 230Right-handed alpha
Helix 12
12
A
238 247Right-handed alpha
Helix 13
13
A
251 270Right-handed alpha
Helix 14
14
B
9 17Right-handed alpha
Helix 15
15
B
41 45Right-handed 310
Helix 16
16
B
57 61Right-handed 310
Helix 17
17
B
75 83Right-handed alpha
Helix 18
18
B
100 105Right-handed alpha
Helix 19
19
B
123 128Right-handed 310
Helix 20
20
B
146 154Right-handed alpha
Helix 21
21
B
163 174Right-handed alpha
Helix 22
22
B
176 195Right-handed alpha
Helix 23
23
B
198 221Right-handed alpha
Helix 24
24
B
223 230Right-handed alpha
Helix 25
25
B
237 246Right-handed alpha
Helix 26
26
B
249 273Right-handed alpha
Helix 27
27
C
10 23Right-handed alpha
Helix 28
28
C
38 43Right-handed alpha
Helix 29
29
C
43 50Right-handed alpha
Helix 30
30
C
57 62Right-handed alpha
Helix 31
31
C
74 83Right-handed alpha
Helix 32
32
C
84 86Right-handed 310
Helix 33
33
C
100 109Right-handed alpha
Helix 34
34
C
123 128Right-handed 310
Helix 35
35
C
148 153Right-handed alpha
Helix 36
36
C
166 173Right-handed alpha
Helix 37
37
C
176 195Right-handed alpha
Helix 38
38
C
198 219Right-handed alpha
Helix 39
39
C
223 229Right-handed alpha
Helix 40
40
C
237 247Right-handed alpha
Helix 41
41
C
250 255Right-handed alpha
Helix 42
42
C
259 273Right-handed alpha
Helix 43
43
D
9 23Right-handed alpha
Helix 44
44
D
26 28Right-handed 310
Helix 45
45
D
40 49Right-handed alpha
Helix 46
46
D
55 62Right-handed alpha
Helix 47
47
D
74 84Right-handed alpha
Helix 48
48
D
100 109Right-handed alpha
Helix 49
49
D
123 128Right-handed 310
Helix 50
50
D
142 153Right-handed alpha
Helix 51
51
D
168 173Right-handed alpha
Helix 52
52
D
176 195Right-handed alpha
Helix 53
53
D
198 219Right-handed alpha
Helix 54
54
D
223 231Right-handed alpha
Helix 55
55
D
237 247Right-handed alpha
Helix 56
56
D
249 270Right-handed alpha
Helix 57
57
E
9 22Right-handed alpha
Helix 58
58
E
26 28Right-handed 310
Helix 59
59
E
43 48Right-handed alpha
Helix 60
60
E
55 63Right-handed alpha
Helix 61
61
E
74 80Right-handed alpha
Helix 62
62
E
100 110Right-handed alpha
Helix 63
63
E
123 129Right-handed 310
Helix 64
64
E
145 154Right-handed alpha
Helix 65
65
E
155 157Right-handed 310
Helix 66
66
E
165 169Right-handed 310
Helix 67
67
E
176 195Right-handed alpha
Helix 68
68
E
198 218Right-handed alpha
Helix 69
69
E
223 231Right-handed alpha
Helix 70
70
E
237 248Right-handed alpha
Helix 71
71
E
249 273Right-handed alpha
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There are 8 sheets in PDB entry 2GER. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
30 33parallel
Strand 3
A
3 5parallel
Strand 4
A
65 68parallel
Strand 5
A
91 94parallel
Strand 6
A
117 121parallel
Strand 7
A
134 137anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
157 158parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
4 5parallel
Strand 3
B
66 67parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
117 121parallel
Strand 3
B
134 136anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 4first strand
Strand 2
C
30 31parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 121first strand
Strand 2
C
132 137anti-parallel
Strand 3
C
158 161parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 53first strand
Strand 2
D
30 33parallel
Strand 3
D
3 5parallel
Strand 4
D
65 68parallel
Strand 5
D
91 95parallel
Strand 6
D
117 121parallel
Strand 7
D
131 136anti-parallel
Strand 8
D
157 161parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 53first strand
Strand 2
E
30 33parallel
Strand 3
E
3 6parallel
Strand 4
E
65 68parallel
Strand 5
E
91 94parallel
Strand 6
E
117 121parallel
Strand 7
E
132 137anti-parallel
Strand 8
E
158 161parallel
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