Analysis of interatomic Contacts of Structural Units in PDB entry:
2GET


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GET entry

There are 2 chains in PDB entry 2GET (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5ALA 172
A
 ALA 174LEU 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2GET. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed alpha
Helix 2
2
A
20 23Right-handed 310
Helix 3
3
A
30 36Right-handed alpha
Helix 4
4
A
45 52Right-handed alpha
Helix 5
5
A
52 78Right-handed alpha
Helix 6
6
A
102 116Right-handed alpha
Helix 7
7
A
129 132Right-handed 310
Helix 8
8
A
134 140Right-handed alpha
Helix 9
9
A
143 147Right-handed 310
Helix 10
10
A
149 153Right-handed 310
Helix 11
11
A
154 168Right-handed alpha
Helix 12
12
A
213 218Right-handed 310
Helix 13
13
A
227 244Right-handed alpha
Helix 14
14
A
254 258Right-handed 310
Helix 15
15
A
261 276Right-handed alpha
Helix 16
16
A
276 284Right-handed alpha
Helix 17
17
A
285 292Right-handed 310
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There are 2 sheets in PDB entry 2GET. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
304 310anti-parallel
Strand 3
A
294 298anti-parallel
Strand 4
A
220 225parallel
Strand 5
A
91 97parallel
Strand 6
A
197 201parallel
Strand 7
A
123 127parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 178first strand
Strand 2
A
183 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il