Analysis of interatomic Contacts of Structural Units in PDB entry:
2GF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GF8 entry

There are 2 chains in PDB entry 2GF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1931ASN 3209
B
 LEU 3633TRP 4721
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 2GF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1951 1956Right-handed alpha
Helix 2
2
A
1975 1980Right-handed alpha
Helix 3
3
A
2035 2039Right-handed 310
Helix 4
4
A
2147 2153Right-handed alpha
Helix 5
5
A
2166 2171Right-handed alpha
Helix 6
6
A
2189 2197Right-handed alpha
Helix 7
7
A
2226 2236Right-handed alpha
Helix 8
8
A
2249 2260Right-handed alpha
Helix 9
9
A
2278 2286Right-handed alpha
Helix 10
10
A
2357 2365Right-handed alpha
Helix 11
11
A
2419 2430Right-handed alpha
Helix 12
12
A
2439 2446Right-handed alpha
Helix 13
13
A
2451 2462Right-handed alpha
Helix 14
14
A
2470 2479Right-handed alpha
Helix 15
15
A
2496 2501Right-handed alpha
Helix 16
16
A
2505 2513Right-handed alpha
Helix 17
17
A
2517 2528Right-handed alpha
Helix 18
18
A
2548 2556Right-handed alpha
Helix 19
19
A
2561 2574Right-handed alpha
Helix 20
20
A
2585 2593Right-handed alpha
Helix 21
21
A
2599 2604Right-handed alpha
Helix 22
22
A
2605 2614Right-handed alpha
Helix 23
23
A
2618 2623Right-handed alpha
Helix 24
24
A
2629 2635Right-handed alpha
Helix 25
25
A
2677 2684Right-handed alpha
Helix 26
26
A
2702 2718Right-handed alpha
Helix 27
27
A
2753 2764Right-handed alpha
Helix 28
28
A
2795 2800Right-handed alpha
Helix 29
29
A
2815 2823Right-handed alpha
Helix 30
30
A
2833 2840Right-handed alpha
Helix 31
31
A
2850 2858Right-handed alpha
Helix 32
32
A
2859 2864Right-handed alpha
Helix 33
33
A
2878 2882Right-handed 310
Helix 34
34
A
2902 2906Right-handed 310
Helix 35
35
A
2919 2924Right-handed alpha
Helix 36
36
A
2957 2965Right-handed alpha
Helix 37
37
A
2973 2978Right-handed alpha
Helix 38
38
A
2986 2999Right-handed alpha
Helix 39
39
A
3018 3024Right-handed alpha
Helix 40
40
A
3043 3053Right-handed alpha
Helix 41
41
A
3070 3075Right-handed alpha
Helix 42
42
A
3075 3086Right-handed alpha
Helix 43
43
A
3120 3129Right-handed alpha
Helix 44
44
A
3148 3153Right-handed alpha
Helix 45
45
A
3181 3188Right-handed alpha
Helix 46
46
A
3198 3203Right-handed alpha
Helix 47
47
B
3645 3656Right-handed alpha
Helix 48
48
B
3678 3683Right-handed alpha
Helix 49
49
B
3697 3704Right-handed alpha
Helix 50
50
B
3726 3736Right-handed alpha
Helix 51
51
B
3769 3774Right-handed alpha
Helix 52
52
B
3784 3795Right-handed alpha
Helix 53
53
B
3804 3815Right-handed alpha
Helix 54
54
B
3819 3830Right-handed alpha
Helix 55
55
B
3845 3858Right-handed alpha
Helix 56
56
B
3870 3878Right-handed alpha
Helix 57
57
B
3886 3893Right-handed alpha
Helix 58
58
B
3911 3920Right-handed alpha
Helix 59
59
B
3925 3948Right-handed alpha
Helix 60
60
B
3949 3957Right-handed alpha
Helix 61
61
B
3974 3987Right-handed alpha
Helix 62
62
B
3991 3995Right-handed 310
Helix 63
63
B
4000 4019Right-handed alpha
Helix 64
64
B
4020 4036Right-handed alpha
Helix 65
65
B
4038 4043Right-handed alpha
Helix 66
66
B
4063 4081Right-handed alpha
Helix 67
67
B
4084 4092Right-handed alpha
Helix 68
68
B
4115 4124Right-handed alpha
Helix 69
69
B
4169 4174Right-handed alpha
Helix 70
70
B
4190 4197Right-handed alpha
Helix 71
71
B
4224 4229Right-handed alpha
Helix 72
72
B
4243 4248Right-handed alpha
Helix 73
73
B
4263 4269Right-handed alpha
Helix 74
74
B
4302 4314Right-handed alpha
Helix 75
75
B
4342 4353Right-handed alpha
Helix 76
76
B
4386 4391Right-handed alpha
Helix 77
77
B
4404 4408Right-handed 310
Helix 78
78
B
4419 4430Right-handed alpha
Helix 79
79
B
4464 4472Right-handed alpha
Helix 80
80
B
4477 4487Right-handed alpha
Helix 81
81
B
4490 4494Right-handed alpha
Helix 82
82
B
4515 4520Right-handed alpha
Helix 83
83
B
4530 4538Right-handed alpha
Helix 84
84
B
4554 4566Right-handed alpha
Helix 85
85
B
4570 4576Right-handed alpha
Helix 86
86
B
4710 4715Right-handed alpha
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There are 7 sheets in PDB entry 2GF8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2020 2022first strand
Strand 2
A
2070 2072parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2266 2268first strand
Strand 2
A
2387 2391parallel
Strand 3
A
2345 2346parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2463 2464first strand
Strand 2
A
2468 2469anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3966 3967first strand
Strand 2
B
3969 3970parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4495 4496first strand
Strand 2
B
4498 4499parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4649 4651first strand
Strand 2
B
4658 4660anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4673 4676first strand
Strand 2
B
4680 4682anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il