Analysis of interatomic Contacts of Structural Units in PDB entry:
2GFG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GFG entry

There are 3 chains in PDB entry 2GFG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 190
B
 MSE 1LYS 188
C
 MSE 1SER 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2GFG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 25Right-handed alpha
Helix 2
2
A
28 32Right-handed 310
Helix 3
3
A
45 50Right-handed alpha
Helix 4
4
A
83 94Right-handed alpha
Helix 5
5
A
99 108Right-handed alpha
Helix 6
6
A
111 115Right-handed 310
Helix 7
7
A
156 171Right-handed alpha
Helix 8
8
A
180 190Right-handed alpha
Helix 9
9
B
14 25Right-handed alpha
Helix 10
10
B
28 32Right-handed 310
Helix 11
11
B
45 50Right-handed alpha
Helix 12
12
B
83 94Right-handed alpha
Helix 13
13
B
99 108Right-handed alpha
Helix 14
14
B
111 115Right-handed 310
Helix 15
15
B
156 171Right-handed alpha
Helix 16
16
B
180 186Right-handed alpha
Helix 17
17
C
14 25Right-handed alpha
Helix 18
18
C
28 30Right-handed 310
Helix 19
19
C
45 50Right-handed alpha
Helix 20
20
C
83 94Right-handed alpha
Helix 21
21
C
99 108Right-handed alpha
Helix 22
22
C
156 171Right-handed alpha
Helix 23
23
C
180 187Right-handed alpha
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There are 3 sheets in PDB entry 2GFG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 13first strand
Strand 2
A
75 82anti-parallel
Strand 3
A
62 70anti-parallel
Strand 4
A
53 59anti-parallel
Strand 5
A
33 41anti-parallel
Strand 6
A
116 130anti-parallel
Strand 7
A
133 142anti-parallel
Strand 8
A
145 154anti-parallel
Strand 9
A
3 13anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 13first strand
Strand 2
B
75 82anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
53 59anti-parallel
Strand 5
B
33 41anti-parallel
Strand 6
B
116 130anti-parallel
Strand 7
B
133 142anti-parallel
Strand 8
B
145 154anti-parallel
Strand 9
B
3 13anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
75 82anti-parallel
Strand 3
C
62 70anti-parallel
Strand 4
C
53 59anti-parallel
Strand 5
C
32 41anti-parallel
Strand 6
C
116 130anti-parallel
Strand 7
C
133 142anti-parallel
Strand 8
C
145 153anti-parallel
Strand 9
C
8 13anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il