Analysis of interatomic Contacts of Structural Units in PDB entry:
2GFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GFI entry

There are 2 chains in PDB entry 2GFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4SER 461
B
 VAL 4SER 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 2GFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed 310
Helix 2
2
A
25 29Right-handed 310
Helix 3
3
A
31 40Right-handed 310
Helix 4
4
A
79 95Right-handed alpha
Helix 5
5
A
101 109Right-handed 310
Helix 6
6
A
117 121Right-handed 310
Helix 7
7
A
135 152Right-handed alpha
Helix 8
8
A
153 155Right-handed 310
Helix 9
9
A
168 184Right-handed alpha
Helix 10
10
A
185 187Right-handed 310
Helix 11
11
A
200 204Right-handed 310
Helix 12
12
A
209 214Right-handed 310
Helix 13
13
A
222 227Right-handed alpha
Helix 14
14
A
231 245Right-handed alpha
Helix 15
15
A
251 270Right-handed alpha
Helix 16
16
A
272 278Right-handed 310
Helix 17
17
A
279 299Right-handed alpha
Helix 18
18
A
304 322Right-handed alpha
Helix 19
19
A
335 347Right-handed alpha
Helix 20
20
A
367 372Right-handed alpha
Helix 21
21
A
408 412Right-handed 310
Helix 22
22
A
415 427Right-handed alpha
Helix 23
23
A
430 436Right-handed alpha
Helix 24
24
A
444 449Right-handed alpha
Helix 25
25
B
16 21Right-handed 310
Helix 26
26
B
25 29Right-handed 310
Helix 27
27
B
31 40Right-handed 310
Helix 28
28
B
79 95Right-handed alpha
Helix 29
29
B
101 109Right-handed 310
Helix 30
30
B
117 121Right-handed 310
Helix 31
31
B
135 152Right-handed alpha
Helix 32
32
B
153 155Right-handed 310
Helix 33
33
B
168 184Right-handed alpha
Helix 34
34
B
185 187Right-handed 310
Helix 35
35
B
200 204Right-handed 310
Helix 36
36
B
209 214Right-handed 310
Helix 37
37
B
222 228Right-handed alpha
Helix 38
38
B
231 245Right-handed alpha
Helix 39
39
B
251 270Right-handed alpha
Helix 40
40
B
272 278Right-handed 310
Helix 41
41
B
279 299Right-handed alpha
Helix 42
42
B
304 322Right-handed alpha
Helix 43
43
B
335 347Right-handed alpha
Helix 44
44
B
367 372Right-handed alpha
Helix 45
45
B
415 427Right-handed alpha
Helix 46
46
B
430 436Right-handed alpha
Helix 47
47
B
444 449Right-handed alpha
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There are 4 sheets in PDB entry 2GFI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 197first strand
Strand 2
A
161 166parallel
Strand 3
A
329 334parallel
Strand 4
A
62 72parallel
Strand 5
A
377 385anti-parallel
Strand 6
A
388 395anti-parallel
Strand 7
A
398 400anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 197first strand
Strand 2
A
161 166parallel
Strand 3
A
329 334parallel
Strand 4
A
62 72parallel
Strand 5
A
377 385anti-parallel
Strand 6
A
388 395anti-parallel
Strand 7
A
413 414anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 197first strand
Strand 2
B
161 166parallel
Strand 3
B
329 334parallel
Strand 4
B
62 72parallel
Strand 5
B
377 385anti-parallel
Strand 6
B
388 395anti-parallel
Strand 7
B
398 400anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 197first strand
Strand 2
B
161 166parallel
Strand 3
B
329 334parallel
Strand 4
B
62 72parallel
Strand 5
B
377 385anti-parallel
Strand 6
B
388 395anti-parallel
Strand 7
B
413 414anti-parallel
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