Analysis of interatomic Contacts of Structural Units in PDB entry:
2GFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GFP entry

There are 2 chains in PDB entry 2GFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9LEU 383
B
 LEU 9LEU 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2GFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 36Right-handed alpha
Helix 2
2
A
42 61Right-handed alpha
Helix 3
3
A
62 68Right-handed alpha
Helix 4
4
A
76 127Right-handed alpha
Helix 5
5
A
132 155Right-handed alpha
Helix 6
6
A
157 177Right-handed alpha
Helix 7
7
A
201 230Right-handed alpha
Helix 8
8
A
234 251Right-handed alpha
Helix 9
9
A
251 265Right-handed alpha
Helix 10
10
A
268 284Right-handed alpha
Helix 11
11
A
289 316Right-handed alpha
Helix 12
12
A
320 326Right-handed alpha
Helix 13
13
A
326 349Right-handed alpha
Helix 14
14
A
355 378Right-handed alpha
Helix 15
15
B
9 36Right-handed alpha
Helix 16
16
B
42 61Right-handed alpha
Helix 17
17
B
62 68Right-handed alpha
Helix 18
18
B
76 127Right-handed alpha
Helix 19
19
B
132 155Right-handed alpha
Helix 20
20
B
157 177Right-handed alpha
Helix 21
21
B
201 230Right-handed alpha
Helix 22
22
B
234 251Right-handed alpha
Helix 23
23
B
251 265Right-handed alpha
Helix 24
24
B
268 284Right-handed alpha
Helix 25
25
B
289 316Right-handed alpha
Helix 26
26
B
320 326Right-handed alpha
Helix 27
27
B
326 349Right-handed alpha
Helix 28
28
B
355 378Right-handed alpha
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There are no sheets in PDB entry 2GFP
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il