Analysis of interatomic Contacts of Structural Units in PDB entry:
2GFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GFX entry

There is 1 chain in PDB entry 2GFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ILE 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2GFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 29Right-handed alpha
Helix 2
2
A
63 68Right-handed alpha
Helix 3
3
A
71 89Right-handed alpha
Helix 4
4
A
96 98Right-handed 310
Helix 5
5
A
110 125Right-handed alpha
Helix 6
6
A
126 129Right-handed 310
Helix 7
7
A
132 138Right-handed alpha
Helix 8
8
A
140 150Right-handed alpha
Helix 9
9
A
161 163Right-handed 310
Helix 10
10
A
164 180Right-handed alpha
Helix 11
11
A
195 205Right-handed alpha
Helix 12
12
A
214 219Right-handed alpha
Helix 13
13
A
243 248Right-handed alpha
Helix 14
14
A
276 291Right-handed alpha
Helix 15
15
A
293 295Right-handed 310
Helix 16
16
A
307 323Right-handed alpha
Helix 17
17
A
324 328Right-handed 310
Helix 18
18
A
334 339Right-handed alpha
Helix 19
19
A
341 343Right-handed 310
Helix 20
20
A
344 359Right-handed alpha
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There are 3 sheets in PDB entry 2GFX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
100 105parallel
Strand 3
A
184 191parallel
Strand 4
A
234 242anti-parallel
Strand 5
A
5 13anti-parallel
Strand 6
A
255 264anti-parallel
Strand 7
A
403 411anti-parallel
Strand 8
A
392 399anti-parallel
Strand 9
A
297 301parallel
Strand 10
A
330 332parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
49 51anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
385 386anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il