Analysis of interatomic Contacts of Structural Units in PDB entry:
2GGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GGD entry

There is 1 chain in PDB entry 2GGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6SER 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2GGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 41Right-handed alpha
Helix 2
2
A
53 66Right-handed alpha
Helix 3
3
A
99 112Right-handed alpha
Helix 4
4
A
124 128Right-handed 310
Helix 5
5
A
130 140Right-handed alpha
Helix 6
6
A
173 185Right-handed alpha
Helix 7
7
A
201 210Right-handed alpha
Helix 8
8
A
244 258Right-handed alpha
Helix 9
9
A
271 274Right-handed 310
Helix 10
10
A
275 284Right-handed alpha
Helix 11
11
A
317 326Right-handed 310
Helix 12
12
A
327 336Right-handed alpha
Helix 13
13
A
347 353Right-handed 310
Helix 14
14
A
356 368Right-handed alpha
Helix 15
15
A
403 415Right-handed alpha
Helix 16
16
A
426 432Right-handed 310
Helix 17
17
A
435 443Right-handed alpha
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There are 6 sheets in PDB entry 2GGD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
421 423parallel
Strand 3
A
10 13anti-parallel
Strand 4
A
446 449anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
262 269parallel
Strand 3
A
299 307anti-parallel
Strand 4
A
287 296anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
76 82anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
238 240parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
116 120parallel
Strand 3
A
151 157anti-parallel
Strand 4
A
143 147anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
190 195parallel
Strand 3
A
224 229anti-parallel
Strand 4
A
214 218anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
341 344parallel
Strand 3
A
379 382anti-parallel
Strand 4
A
371 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il