Analysis of interatomic Contacts of Structural Units in PDB entry:
2GGE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GGE entry

There are 8 chains in PDB entry 2GGE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	GLU 375
B	ALA 2	GLU 375
C	ALA 2	GLU 375
D	ALA 2	HIS 377
E	LEU 3	GLU 375
F	LEU 3	GLU 375
G	ALA 2	GLU 375
H	ALA 2	GLU 375

There are123 helices in PDB entry 2GGE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	54	65	Right-handed alpha
Helix 2	2	A	65	71	Right-handed alpha
Helix 3	3	A	77	89	Right-handed alpha
Helix 4	4	A	89	108	Right-handed alpha
Helix 5	5	A	111	116	Right-handed alpha
Helix 6	6	A	138	153	Right-handed alpha
Helix 7	7	A	166	182	Right-handed alpha
Helix 8	8	A	196	202	Right-handed alpha
Helix 9	9	A	203	208	Right-handed alpha
Helix 10	10	A	224	235	Right-handed alpha
Helix 11	11	A	247	257	Right-handed alpha
Helix 12	12	A	271	287	Right-handed alpha
Helix 13	13	A	298	310	Right-handed alpha
Helix 14	14	A	332	337	Right-handed 310
Helix 15	15	A	360	367	Right-handed alpha
Helix 16	16	B	54	65	Right-handed alpha
Helix 17	17	B	65	71	Right-handed alpha
Helix 18	18	B	77	89	Right-handed alpha
Helix 19	19	B	89	108	Right-handed alpha
Helix 20	20	B	111	116	Right-handed alpha
Helix 21	21	B	138	152	Right-handed alpha
Helix 22	22	B	166	182	Right-handed alpha
Helix 23	23	B	196	202	Right-handed alpha
Helix 24	24	B	203	208	Right-handed alpha
Helix 25	25	B	224	235	Right-handed alpha
Helix 26	26	B	247	257	Right-handed alpha
Helix 27	27	B	266	270	Right-handed 310
Helix 28	28	B	272	287	Right-handed alpha
Helix 29	29	B	298	310	Right-handed alpha
Helix 30	30	B	332	337	Right-handed 310
Helix 31	31	B	360	367	Right-handed alpha
Helix 32	32	C	54	65	Right-handed alpha
Helix 33	33	C	65	71	Right-handed alpha
Helix 34	34	C	77	87	Right-handed alpha
Helix 35	35	C	89	109	Right-handed alpha
Helix 36	36	C	111	116	Right-handed alpha
Helix 37	37	C	138	152	Right-handed alpha
Helix 38	38	C	166	182	Right-handed alpha
Helix 39	39	C	196	202	Right-handed alpha
Helix 40	40	C	203	208	Right-handed alpha
Helix 41	41	C	224	235	Right-handed alpha
Helix 42	42	C	247	257	Right-handed alpha
Helix 43	43	C	266	270	Right-handed 310
Helix 44	44	C	272	287	Right-handed alpha
Helix 45	45	C	298	310	Right-handed alpha
Helix 46	46	C	332	337	Right-handed 310
Helix 47	47	C	360	367	Right-handed alpha
Helix 48	48	D	54	65	Right-handed alpha
Helix 49	49	D	65	71	Right-handed alpha
Helix 50	50	D	77	87	Right-handed alpha
Helix 51	51	D	89	109	Right-handed alpha
Helix 52	52	D	111	116	Right-handed alpha
Helix 53	53	D	138	152	Right-handed alpha
Helix 54	54	D	166	182	Right-handed alpha
Helix 55	55	D	196	202	Right-handed alpha
Helix 56	56	D	203	208	Right-handed alpha
Helix 57	57	D	224	235	Right-handed alpha
Helix 58	58	D	247	257	Right-handed alpha
Helix 59	59	D	272	286	Right-handed alpha
Helix 60	60	D	298	310	Right-handed alpha
Helix 61	61	D	332	338	Right-handed 310
Helix 62	62	D	360	367	Right-handed alpha
Helix 63	63	D	373	377	Right-handed 310
Helix 64	64	E	54	65	Right-handed alpha
Helix 65	65	E	65	71	Right-handed alpha
Helix 66	66	E	77	89	Right-handed alpha
Helix 67	67	E	89	108	Right-handed alpha
Helix 68	68	E	111	116	Right-handed alpha
Helix 69	69	E	138	152	Right-handed alpha
Helix 70	70	E	166	179	Right-handed alpha
Helix 71	71	E	196	202	Right-handed alpha
Helix 72	72	E	203	208	Right-handed alpha
Helix 73	73	E	224	233	Right-handed alpha
Helix 74	74	E	247	257	Right-handed alpha
Helix 75	75	E	272	287	Right-handed alpha
Helix 76	76	E	298	310	Right-handed alpha
Helix 77	77	E	332	337	Right-handed 310
Helix 78	78	E	360	367	Right-handed alpha
Helix 79	79	F	54	65	Right-handed alpha
Helix 80	80	F	65	71	Right-handed alpha
Helix 81	81	F	77	89	Right-handed alpha
Helix 82	82	F	89	108	Right-handed alpha
Helix 83	83	F	111	116	Right-handed alpha
Helix 84	84	F	138	153	Right-handed alpha
Helix 85	85	F	166	179	Right-handed alpha
Helix 86	86	F	196	202	Right-handed alpha
Helix 87	87	F	203	208	Right-handed alpha
Helix 88	88	F	224	233	Right-handed alpha
Helix 89	89	F	247	257	Right-handed alpha
Helix 90	90	F	272	287	Right-handed alpha
Helix 91	91	F	298	310	Right-handed alpha
Helix 92	92	F	332	337	Right-handed 310
Helix 93	93	F	360	368	Right-handed alpha
Helix 94	94	G	54	65	Right-handed alpha
Helix 95	95	G	65	71	Right-handed alpha
Helix 96	96	G	77	89	Right-handed alpha
Helix 97	97	G	89	108	Right-handed alpha
Helix 98	98	G	111	116	Right-handed alpha
Helix 99	99	G	138	153	Right-handed alpha
Helix 100	100	G	166	182	Right-handed alpha
Helix 101	101	G	196	202	Right-handed alpha
Helix 102	102	G	203	208	Right-handed alpha
Helix 103	103	G	224	235	Right-handed alpha
Helix 104	104	G	247	257	Right-handed alpha
Helix 105	105	G	271	287	Right-handed alpha
Helix 106	106	G	298	310	Right-handed alpha
Helix 107	107	G	332	337	Right-handed 310
Helix 108	108	G	360	368	Right-handed alpha
Helix 109	109	H	54	65	Right-handed alpha
Helix 110	110	H	65	71	Right-handed alpha
Helix 111	111	H	77	89	Right-handed alpha
Helix 112	112	H	89	108	Right-handed alpha
Helix 113	113	H	111	116	Right-handed alpha
Helix 114	114	H	138	153	Right-handed alpha
Helix 115	115	H	166	182	Right-handed alpha
Helix 116	116	H	196	203	Right-handed alpha
Helix 117	117	H	203	208	Right-handed alpha
Helix 118	118	H	224	235	Right-handed alpha
Helix 119	119	H	247	257	Right-handed alpha
Helix 120	120	H	272	287	Right-handed alpha
Helix 121	121	H	298	310	Right-handed alpha
Helix 122	122	H	332	337	Right-handed 310
Helix 123	123	H	360	367	Right-handed alpha

There are 24 sheets in PDB entry 2GGE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	24	first strand
Strand 2	A	27	41	anti-parallel
Strand 3	A	46	51	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	262	263	parallel
Strand 3	A	239	241	parallel
Strand 4	A	213	217	parallel
Strand 5	A	186	190	parallel
Strand 6	A	157	161	parallel
Strand 7	A	123	129	parallel
Strand 8	A	325	328	parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	262	263	parallel
Strand 3	A	239	241	parallel
Strand 4	A	213	217	parallel
Strand 5	A	186	190	parallel
Strand 6	A	157	161	parallel
Strand 7	A	123	129	parallel
Strand 8	A	346	348	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	24	first strand
Strand 2	B	27	41	anti-parallel
Strand 3	B	46	51	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	262	263	parallel
Strand 3	B	239	241	parallel
Strand 4	B	213	217	parallel
Strand 5	B	186	190	parallel
Strand 6	B	157	161	parallel
Strand 7	B	123	129	parallel
Strand 8	B	325	328	parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	262	263	parallel
Strand 3	B	239	241	parallel
Strand 4	B	213	217	parallel
Strand 5	B	186	190	parallel
Strand 6	B	157	161	parallel
Strand 7	B	123	129	parallel
Strand 8	B	346	348	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	24	first strand
Strand 2	C	27	41	anti-parallel
Strand 3	C	46	51	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	262	263	parallel
Strand 3	C	239	241	parallel
Strand 4	C	213	217	parallel
Strand 5	C	186	190	parallel
Strand 6	C	157	161	parallel
Strand 7	C	123	129	parallel
Strand 8	C	325	328	parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	262	263	parallel
Strand 3	C	239	241	parallel
Strand 4	C	213	217	parallel
Strand 5	C	186	190	parallel
Strand 6	C	157	161	parallel
Strand 7	C	123	129	parallel
Strand 8	C	346	348	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	24	first strand
Strand 2	D	27	41	anti-parallel
Strand 3	D	46	51	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	290	first strand
Strand 2	D	262	263	parallel
Strand 3	D	239	241	parallel
Strand 4	D	213	217	parallel
Strand 5	D	186	190	parallel
Strand 6	D	157	161	parallel
Strand 7	D	123	129	parallel
Strand 8	D	325	328	parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	290	first strand
Strand 2	D	262	263	parallel
Strand 3	D	239	241	parallel
Strand 4	D	213	217	parallel
Strand 5	D	186	190	parallel
Strand 6	D	157	161	parallel
Strand 7	D	123	129	parallel
Strand 8	D	346	348	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	24	first strand
Strand 2	E	27	41	anti-parallel
Strand 3	E	46	51	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	290	first strand
Strand 2	E	262	263	parallel
Strand 3	E	239	241	parallel
Strand 4	E	213	217	parallel
Strand 5	E	186	190	parallel
Strand 6	E	157	161	parallel
Strand 7	E	123	129	parallel
Strand 8	E	325	328	parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	290	first strand
Strand 2	E	262	263	parallel
Strand 3	E	239	241	parallel
Strand 4	E	213	217	parallel
Strand 5	E	186	190	parallel
Strand 6	E	157	161	parallel
Strand 7	E	123	129	parallel
Strand 8	E	346	348	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	24	first strand
Strand 2	F	27	41	anti-parallel
Strand 3	F	46	51	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	289	290	first strand
Strand 2	F	262	263	parallel
Strand 3	F	239	241	parallel
Strand 4	F	213	217	parallel
Strand 5	F	186	190	parallel
Strand 6	F	157	161	parallel
Strand 7	F	123	129	parallel
Strand 8	F	325	328	parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	289	290	first strand
Strand 2	F	262	263	parallel
Strand 3	F	239	241	parallel
Strand 4	F	213	217	parallel
Strand 5	F	186	190	parallel
Strand 6	F	157	161	parallel
Strand 7	F	123	129	parallel
Strand 8	F	346	348	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	24	first strand
Strand 2	G	27	41	anti-parallel
Strand 3	G	46	51	anti-parallel

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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	289	290	first strand
Strand 2	G	262	263	parallel
Strand 3	G	239	241	parallel
Strand 4	G	213	217	parallel
Strand 5	G	186	190	parallel
Strand 6	G	157	161	parallel
Strand 7	G	123	129	parallel
Strand 8	G	325	328	parallel

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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	289	290	first strand
Strand 2	G	262	263	parallel
Strand 3	G	239	241	parallel
Strand 4	G	213	217	parallel
Strand 5	G	186	190	parallel
Strand 6	G	157	161	parallel
Strand 7	G	123	129	parallel
Strand 8	G	346	348	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	24	first strand
Strand 2	H	27	41	anti-parallel
Strand 3	H	46	51	anti-parallel

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There are 8 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	289	290	first strand
Strand 2	H	262	263	parallel
Strand 3	H	239	241	parallel
Strand 4	H	213	217	parallel
Strand 5	H	186	190	parallel
Strand 6	H	157	161	parallel
Strand 7	H	123	129	parallel
Strand 8	H	325	328	parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	289	290	first strand
Strand 2	H	262	263	parallel
Strand 3	H	239	241	parallel
Strand 4	H	213	217	parallel
Strand 5	H	186	190	parallel
Strand 6	H	157	161	parallel
Strand 7	H	123	129	parallel
Strand 8	H	346	348	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GGE

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GGE