Analysis of interatomic Contacts of Structural Units in PDB entry:
2GGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GGM entry

There are 4 chains in PDB entry 2GGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 24TYR 172
B
 LEU 25LYS 168
C
 ASN 847ARG 863
D
 ASN 847ARG 863
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2GGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 40Right-handed alpha
Helix 2
2
A
52 60Right-handed alpha
Helix 3
3
A
65 77Right-handed alpha
Helix 4
4
A
86 114Right-handed alpha
Helix 5
5
A
122 133Right-handed alpha
Helix 6
6
A
138 150Right-handed alpha
Helix 7
7
A
158 168Right-handed alpha
Helix 8
8
B
28 38Right-handed alpha
Helix 9
9
B
39 41Right-handed 310
Helix 10
10
B
52 60Right-handed alpha
Helix 11
11
B
65 77Right-handed alpha
Helix 12
12
B
86 114Right-handed alpha
Helix 13
13
B
122 133Right-handed alpha
Helix 14
14
B
138 150Right-handed alpha
Helix 15
15
B
158 168Right-handed alpha
Helix 16
16
C
847 863Right-handed alpha
Helix 17
17
D
847 858Right-handed alpha
Helix 18
18
D
858 863Right-handed alpha
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There are 2 sheets in PDB entry 2GGM. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
83 85anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
83 85anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il