Analysis of interatomic Contacts of Structural Units in PDB entry:
2GGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GGQ entry

There is 1 chain in PDB entry 2GGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2GGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
16 20Right-handed 310
Helix 3
3
A
22 25Right-handed 310
Helix 4
4
A
33 44Right-handed alpha
Helix 5
5
A
57 65Right-handed alpha
Helix 6
6
A
79 85Right-handed alpha
Helix 7
7
A
105 112Right-handed alpha
Helix 8
8
A
166 174Right-handed alpha
Helix 9
9
A
183 195Right-handed alpha
Helix 10
10
A
211 226Right-handed alpha
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There are 10 sheets in PDB entry 2GGQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
48 53parallel
Strand 3
A
2 7parallel
Strand 4
A
93 97parallel
Strand 5
A
155 163anti-parallel
Strand 6
A
117 123anti-parallel
Strand 7
A
197 201parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
31 32anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
206 208anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
141 146anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
245 247parallel
Strand 3
A
263 265parallel
Strand 4
A
281 283parallel
Strand 5
A
298 300parallel
Strand 6
A
316 317parallel
Strand 7
A
358 359parallel
Strand 8
A
376 377parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
252 253parallel
Strand 3
A
270 271parallel
Strand 4
A
288 296parallel
Strand 5
A
276 277parallel
Strand 6
A
258 260parallel
Strand 7
A
240 242parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
252 253parallel
Strand 3
A
270 271parallel
Strand 4
A
288 296parallel
Strand 5
A
305 313parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
364 365parallel
Strand 3
A
382 383parallel
Strand 4
A
398 399parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 329first strand
Strand 2
A
370 371parallel
Strand 3
A
388 389parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 343first strand
Strand 2
A
346 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il