Analysis of interatomic Contacts of Structural Units in PDB entry:
2GGT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GGT entry

There are 2 chains in PDB entry 2GGT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 135ARG 298
B
 LEU 135TYR 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2GGT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
153 156Right-handed 310
Helix 2
2
A
171 190Right-handed alpha
Helix 3
3
A
209 219Right-handed alpha
Helix 4
4
A
230 240Right-handed alpha
Helix 5
5
A
282 295Right-handed alpha
Helix 6
6
A
296 298Right-handed 310
Helix 7
7
B
153 156Right-handed 310
Helix 8
8
B
171 189Right-handed alpha
Helix 9
9
B
209 217Right-handed alpha
Helix 10
10
B
230 241Right-handed alpha
Helix 11
11
B
282 295Right-handed alpha
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There are 4 sheets in PDB entry 2GGT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
141 144anti-parallel
Strand 3
A
225 228anti-parallel
Strand 4
A
196 202parallel
Strand 5
A
159 165parallel
Strand 6
A
263 267anti-parallel
Strand 7
A
273 278anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 250first strand
Strand 2
A
256 260anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
141 144anti-parallel
Strand 3
B
225 228anti-parallel
Strand 4
B
197 202parallel
Strand 5
B
160 165parallel
Strand 6
B
264 267anti-parallel
Strand 7
B
273 277anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 247first strand
Strand 2
B
258 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il