Analysis of interatomic Contacts of Structural Units in PDB entry:
2GH8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GH8 entry

There are 3 chains in PDB entry 2GH8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 160	LYS 703
B	THR 163	LYS 703
C	GLU 160	LYS 703

There are 30 helices in PDB entry 2GH8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	177	190	Right-handed alpha
Helix 2	2	A	195	199	Right-handed 310
Helix 3	3	A	225	228	Right-handed 310
Helix 4	4	A	229	236	Right-handed alpha
Helix 5	5	A	237	239	Right-handed 310
Helix 6	6	A	276	281	Right-handed 310
Helix 7	7	A	377	381	Right-handed 310
Helix 8	8	A	485	489	Right-handed 310
Helix 9	9	A	514	520	Right-handed alpha
Helix 10	10	A	582	586	Right-handed 310
Helix 11	11	A	627	637	Right-handed alpha
Helix 12	12	B	179	190	Right-handed alpha
Helix 13	13	B	195	199	Right-handed 310
Helix 14	14	B	225	228	Right-handed 310
Helix 15	15	B	229	237	Right-handed alpha
Helix 16	16	B	276	281	Right-handed 310
Helix 17	17	B	377	381	Right-handed 310
Helix 18	18	B	474	478	Right-handed 310
Helix 19	19	B	515	520	Right-handed alpha
Helix 20	20	B	582	586	Right-handed 310
Helix 21	21	B	627	637	Right-handed alpha
Helix 22	22	C	177	190	Right-handed alpha
Helix 23	23	C	195	200	Right-handed 310
Helix 24	24	C	225	228	Right-handed 310
Helix 25	25	C	229	236	Right-handed alpha
Helix 26	26	C	276	281	Right-handed 310
Helix 27	27	C	377	381	Right-handed 310
Helix 28	28	C	515	520	Right-handed alpha
Helix 29	29	C	582	586	Right-handed 310
Helix 30	30	C	627	637	Right-handed alpha

There are 28 sheets in PDB entry 2GH8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	210	first strand
Strand 2	A	339	348	anti-parallel
Strand 3	A	246	253	anti-parallel
Strand 4	A	295	299	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	223	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	261	267	anti-parallel
Strand 4	A	285	288	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	241	243	anti-parallel
Strand 3	A	353	354	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	B	363	364	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	C	271	272	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	395	first strand
Strand 2	A	602	607	anti-parallel
Strand 3	A	623	624	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	395	first strand
Strand 2	A	602	607	anti-parallel
Strand 3	A	669	671	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	594	596	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	465	first strand
Strand 2	A	537	540	anti-parallel
Strand 3	A	526	533	anti-parallel
Strand 4	A	497	505	anti-parallel
Strand 5	A	560	571	anti-parallel
Strand 6	A	610	612	parallel
Strand 7	A	619	620	anti-parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	465	first strand
Strand 2	A	537	540	anti-parallel
Strand 3	A	526	533	anti-parallel
Strand 4	A	549	552	anti-parallel
Strand 5	A	437	443	anti-parallel
Strand 6	A	423	429	anti-parallel
Strand 7	A	560	571	anti-parallel
Strand 8	A	610	612	parallel
Strand 9	A	619	620	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	685	693	first strand
Strand 2	A	645	652	anti-parallel
Strand 3	A	658	663	anti-parallel
Strand 4	A	700	701	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	210	first strand
Strand 2	B	339	348	anti-parallel
Strand 3	B	246	253	anti-parallel
Strand 4	B	295	299	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	223	first strand
Strand 2	B	317	327	anti-parallel
Strand 3	B	259	267	anti-parallel
Strand 4	B	285	288	anti-parallel
Strand 5	C	161	162	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	241	243	anti-parallel
Strand 3	B	353	354	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	C	363	364	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	395	first strand
Strand 2	B	602	611	anti-parallel
Strand 3	B	669	671	anti-parallel
Strand 4	B	658	663	anti-parallel
Strand 5	B	645	652	anti-parallel
Strand 6	B	685	693	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	624	first strand
Strand 2	B	602	611	anti-parallel
Strand 3	B	669	671	anti-parallel
Strand 4	B	658	663	anti-parallel
Strand 5	B	700	701	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	400	first strand
Strand 2	B	594	596	anti-parallel

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There are 9 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	465	first strand
Strand 2	B	537	540	anti-parallel
Strand 3	B	526	534	anti-parallel
Strand 4	B	549	552	anti-parallel
Strand 5	B	437	442	anti-parallel
Strand 6	B	423	429	anti-parallel
Strand 7	B	560	571	anti-parallel
Strand 8	B	497	505	anti-parallel
Strand 9	B	526	534	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	210	first strand
Strand 2	C	339	348	anti-parallel
Strand 3	C	246	253	anti-parallel
Strand 4	C	295	299	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	223	first strand
Strand 2	C	317	327	anti-parallel
Strand 3	C	259	267	anti-parallel
Strand 4	C	285	288	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	241	243	anti-parallel
Strand 3	C	353	354	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	395	first strand
Strand 2	C	602	607	anti-parallel
Strand 3	C	669	671	anti-parallel
Strand 4	C	658	664	anti-parallel
Strand 5	C	645	652	anti-parallel
Strand 6	C	685	693	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	624	first strand
Strand 2	C	602	607	anti-parallel
Strand 3	C	669	671	anti-parallel
Strand 4	C	658	664	anti-parallel
Strand 5	C	700	701	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	400	first strand
Strand 2	C	594	596	anti-parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	429	first strand
Strand 2	C	560	568	anti-parallel
Strand 3	C	497	500	anti-parallel
Strand 4	C	526	533	anti-parallel
Strand 5	C	537	540	anti-parallel
Strand 6	C	464	465	anti-parallel

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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	439	first strand
Strand 2	C	549	552	anti-parallel
Strand 3	C	526	533	anti-parallel
Strand 4	C	497	500	anti-parallel
Strand 5	C	560	568	anti-parallel
Strand 6	C	504	505	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	610	611	first strand
Strand 2	C	619	620	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GH8

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GH8