Analysis of interatomic Contacts of Structural Units in PDB entry:
2GH9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GH9 entry

There is 1 chain in PDB entry 2GH9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2GH9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 27Right-handed alpha
Helix 2
2
A
38 40Right-handed 310
Helix 3
3
A
41 50Right-handed alpha
Helix 4
4
A
51 53Right-handed 310
Helix 5
5
A
66 73Right-handed alpha
Helix 6
6
A
79 83Right-handed 310
Helix 7
7
A
84 91Right-handed alpha
Helix 8
8
A
92 99Right-handed alpha
Helix 9
9
A
130 142Right-handed alpha
Helix 10
10
A
155 167Right-handed alpha
Helix 11
11
A
188 205Right-handed alpha
Helix 12
12
A
214 225Right-handed alpha
Helix 13
13
A
233 235Right-handed 310
Helix 14
14
A
236 243Right-handed alpha
Helix 15
15
A
279 291Right-handed alpha
Helix 16
16
A
292 303Right-handed alpha
Helix 17
17
A
309 316Right-handed alpha
Helix 18
18
A
319 327Right-handed alpha
Helix 19
19
A
328 332Right-handed 310
Helix 20
20
A
340 358Right-handed alpha
Helix 21
21
A
362 379Right-handed alpha
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There are 5 sheets in PDB entry 2GH9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
3 7parallel
Strand 3
A
58 63parallel
Strand 4
A
265 273anti-parallel
Strand 5
A
108 113anti-parallel
Strand 6
A
306 307anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
3 7parallel
Strand 3
A
58 63parallel
Strand 4
A
265 273anti-parallel
Strand 5
A
333 334parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
104 105anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
227 232parallel
Strand 3
A
116 120anti-parallel
Strand 4
A
247 250anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
179 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il