Analysis of interatomic Contacts of Structural Units in PDB entry:
2GHA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GHA entry

There are 2 chains in PDB entry 2GHA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3GLN 376
B
 MET 3ILE 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 2GHA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 31Right-handed alpha
Helix 2
2
A
40 42Right-handed 310
Helix 3
3
A
43 52Right-handed alpha
Helix 4
4
A
53 55Right-handed 310
Helix 5
5
A
67 74Right-handed alpha
Helix 6
6
A
85 89Right-handed 310
Helix 7
7
A
90 97Right-handed alpha
Helix 8
8
A
128 143Right-handed alpha
Helix 9
9
A
156 167Right-handed alpha
Helix 10
10
A
188 204Right-handed alpha
Helix 11
11
A
212 222Right-handed alpha
Helix 12
12
A
231 233Right-handed 310
Helix 13
13
A
234 241Right-handed alpha
Helix 14
14
A
276 287Right-handed alpha
Helix 15
15
A
290 301Right-handed alpha
Helix 16
16
A
307 315Right-handed alpha
Helix 17
17
A
317 329Right-handed alpha
Helix 18
18
A
336 341Right-handed 310
Helix 19
19
A
342 355Right-handed alpha
Helix 20
20
A
359 376Right-handed alpha
Helix 21
21
B
15 31Right-handed alpha
Helix 22
22
B
40 42Right-handed 310
Helix 23
23
B
43 52Right-handed alpha
Helix 24
24
B
53 55Right-handed 310
Helix 25
25
B
67 74Right-handed alpha
Helix 26
26
B
83 89Right-handed 310
Helix 27
27
B
90 97Right-handed alpha
Helix 28
28
B
128 143Right-handed alpha
Helix 29
29
B
156 167Right-handed alpha
Helix 30
30
B
188 204Right-handed alpha
Helix 31
31
B
212 222Right-handed alpha
Helix 32
32
B
231 233Right-handed 310
Helix 33
33
B
234 241Right-handed alpha
Helix 34
34
B
276 287Right-handed alpha
Helix 35
35
B
290 301Right-handed alpha
Helix 36
36
B
307 315Right-handed alpha
Helix 37
37
B
317 329Right-handed alpha
Helix 38
38
B
336 341Right-handed 310
Helix 39
39
B
342 355Right-handed alpha
Helix 40
40
B
359 375Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 2GHA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
6 11parallel
Strand 3
A
60 64parallel
Strand 4
A
262 270anti-parallel
Strand 5
A
106 111anti-parallel
Strand 6
A
304 305anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
6 11parallel
Strand 3
A
60 64parallel
Strand 4
A
262 270anti-parallel
Strand 5
A
331 332parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
102 103anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
225 230parallel
Strand 3
A
114 118anti-parallel
Strand 4
A
245 248anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 175first strand
Strand 2
A
178 185anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
6 11parallel
Strand 3
B
60 64parallel
Strand 4
B
262 270anti-parallel
Strand 5
B
106 111anti-parallel
Strand 6
B
304 305anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
6 11parallel
Strand 3
B
60 64parallel
Strand 4
B
262 270anti-parallel
Strand 5
B
331 332parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
102 103anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 230first strand
Strand 2
B
114 118anti-parallel
Strand 3
B
245 248anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 175first strand
Strand 2
B
178 185anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il