Analysis of interatomic Contacts of Structural Units in PDB entry:
2GHI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GHI entry

There are 4 chains in PDB entry 2GHI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2GLY 256
B
 LEU 2GLN 254
C
 LEU 2GLN 254
D
 GLU 11GLN 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 2GHI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 15Right-handed alpha
Helix 2
2
A
58 67Right-handed alpha
Helix 3
3
A
84 86Right-handed 310
Helix 4
4
A
87 93Right-handed alpha
Helix 5
5
A
109 115Right-handed alpha
Helix 6
6
A
121 132Right-handed alpha
Helix 7
7
A
134 140Right-handed alpha
Helix 8
8
A
143 146Right-handed 310
Helix 9
9
A
157 173Right-handed alpha
Helix 10
10
A
187 202Right-handed alpha
Helix 11
11
A
213 217Right-handed 310
Helix 12
12
A
236 244Right-handed alpha
Helix 13
13
A
245 256Right-handed alpha
Helix 14
14
B
8 15Right-handed alpha
Helix 15
15
B
58 67Right-handed alpha
Helix 16
16
B
84 86Right-handed 310
Helix 17
17
B
87 93Right-handed alpha
Helix 18
18
B
109 115Right-handed alpha
Helix 19
19
B
121 132Right-handed alpha
Helix 20
20
B
134 140Right-handed alpha
Helix 21
21
B
143 146Right-handed 310
Helix 22
22
B
157 172Right-handed alpha
Helix 23
23
B
187 202Right-handed alpha
Helix 24
24
B
236 243Right-handed alpha
Helix 25
25
B
245 254Right-handed alpha
Helix 26
26
C
8 15Right-handed alpha
Helix 27
27
C
58 67Right-handed alpha
Helix 28
28
C
84 86Right-handed 310
Helix 29
29
C
88 93Right-handed alpha
Helix 30
30
C
108 115Right-handed alpha
Helix 31
31
C
123 132Right-handed alpha
Helix 32
32
C
134 141Right-handed alpha
Helix 33
33
C
143 147Right-handed 310
Helix 34
34
C
159 173Right-handed alpha
Helix 35
35
C
187 203Right-handed alpha
Helix 36
36
C
213 217Right-handed 310
Helix 37
37
C
236 243Right-handed alpha
Helix 38
38
C
245 254Right-handed alpha
Helix 39
39
D
58 67Right-handed alpha
Helix 40
40
D
84 86Right-handed 310
Helix 41
41
D
87 93Right-handed alpha
Helix 42
42
D
108 115Right-handed alpha
Helix 43
43
D
121 132Right-handed alpha
Helix 44
44
D
134 141Right-handed alpha
Helix 45
45
D
143 147Right-handed 310
Helix 46
46
D
157 172Right-handed alpha
Helix 47
47
D
187 200Right-handed alpha
Helix 48
48
D
213 217Right-handed 310
Helix 49
49
D
236 244Right-handed alpha
Helix 50
50
D
245 253Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 2GHI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 43first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
176 180parallel
Strand 3
A
206 210parallel
Strand 4
A
48 52parallel
Strand 5
A
222 227parallel
Strand 6
A
230 235anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
148 149anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 43first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
73 78anti-parallel
Strand 4
B
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
176 180parallel
Strand 3
B
206 210parallel
Strand 4
B
48 52parallel
Strand 5
B
222 227parallel
Strand 6
B
230 235anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
148 149anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 43first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
73 78anti-parallel
Strand 4
C
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 98first strand
Strand 2
C
176 180parallel
Strand 3
C
206 210parallel
Strand 4
C
48 52parallel
Strand 5
C
222 227parallel
Strand 6
C
230 235anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 43first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
73 78anti-parallel
Strand 4
D
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 98first strand
Strand 2
D
176 179parallel
Strand 3
D
206 210parallel
Strand 4
D
48 52parallel
Strand 5
D
222 227parallel
Strand 6
D
230 235anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il