Analysis of interatomic Contacts of Structural Units in PDB entry:
2GHO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GHO entry

There are 4 chains in PDB entry 2GHO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 6	THR 235
B	SER 4	PRO 228
C	MET 1	GLY 1114
D	LYS 3	GLU 1501

There are 84 helices in PDB entry 2GHO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	31	38	Right-handed alpha
Helix 2	2	A	38	48	Right-handed alpha
Helix 3	3	A	74	83	Right-handed alpha
Helix 4	4	A	110	114	Right-handed 310
Helix 5	5	A	206	224	Right-handed alpha
Helix 6	6	B	31	45	Right-handed alpha
Helix 7	7	B	74	85	Right-handed alpha
Helix 8	8	B	206	221	Right-handed alpha
Helix 9	9	C	18	21	Right-handed 310
Helix 10	10	C	22	27	Right-handed alpha
Helix 11	11	C	42	51	Right-handed alpha
Helix 12	12	C	81	86	Right-handed alpha
Helix 13	13	C	193	198	Right-handed alpha
Helix 14	14	C	199	201	Right-handed 310
Helix 15	15	C	275	280	Right-handed alpha
Helix 16	16	C	335	342	Right-handed alpha
Helix 17	17	C	357	362	Right-handed alpha
Helix 18	18	C	399	408	Right-handed alpha
Helix 19	19	C	542	546	Right-handed 310
Helix 20	20	C	549	553	Right-handed 310
Helix 21	21	C	555	563	Right-handed alpha
Helix 22	22	C	583	591	Right-handed alpha
Helix 23	23	C	683	685	Right-handed 310
Helix 24	24	C	692	697	Right-handed alpha
Helix 25	25	C	881	897	Right-handed alpha
Helix 26	26	C	910	933	Right-handed alpha
Helix 27	27	C	937	950	Right-handed alpha
Helix 28	28	C	958	969	Right-handed alpha
Helix 29	29	C	1000	1004	Right-handed 310
Helix 30	30	C	1033	1043	Right-handed alpha
Helix 31	31	C	1045	1051	Right-handed alpha
Helix 32	32	C	1059	1073	Right-handed alpha
Helix 33	33	C	1082	1094	Right-handed alpha
Helix 34	34	D	14	21	Right-handed alpha
Helix 35	35	D	46	50	Right-handed 310
Helix 36	36	D	83	88	Right-handed 310
Helix 37	37	D	111	116	Right-handed alpha
Helix 38	38	D	122	127	Right-handed alpha
Helix 39	39	D	165	176	Right-handed alpha
Helix 40	40	D	180	186	Right-handed alpha
Helix 41	41	D	199	212	Right-handed alpha
Helix 42	42	D	230	234	Right-handed 310
Helix 43	43	D	249	267	Right-handed alpha
Helix 44	44	D	272	293	Right-handed alpha
Helix 45	45	D	311	317	Right-handed alpha
Helix 46	46	D	323	327	Right-handed 310
Helix 47	47	D	354	361	Right-handed alpha
Helix 48	48	D	362	372	Right-handed alpha
Helix 49	49	D	378	384	Right-handed alpha
Helix 50	50	D	385	388	Right-handed 310
Helix 51	51	D	395	405	Right-handed alpha
Helix 52	52	D	418	422	Right-handed 310
Helix 53	53	D	439	444	Right-handed 310
Helix 54	54	D	461	473	Right-handed alpha
Helix 55	55	D	481	484	Right-handed 310
Helix 56	56	D	493	501	Right-handed alpha
Helix 57	57	D	521	531	Right-handed alpha
Helix 58	58	D	544	550	Right-handed alpha
Helix 59	59	D	554	564	Right-handed alpha
Helix 60	60	D	585	600	Right-handed alpha
Helix 61	61	D	601	609	Right-handed alpha
Helix 62	62	D	616	630	Right-handed alpha
Helix 63	63	D	632	654	Right-handed alpha
Helix 64	64	D	659	663	Right-handed 310
Helix 65	65	D	668	681	Right-handed alpha
Helix 66	66	D	693	723	Right-handed alpha
Helix 67	67	D	727	735	Right-handed alpha
Helix 68	68	D	740	748	Right-handed alpha
Helix 69	69	D	775	783	Right-handed alpha
Helix 70	70	D	783	789	Right-handed alpha
Helix 71	71	D	791	799	Right-handed alpha
Helix 72	72	D	802	812	Right-handed alpha
Helix 73	73	D	845	854	Right-handed alpha
Helix 74	74	D	876	889	Right-handed alpha
Helix 75	75	D	929	940	Right-handed alpha
Helix 76	76	D	1254	1265	Right-handed alpha
Helix 77	77	D	1331	1338	Right-handed alpha
Helix 78	78	D	1340	1358	Right-handed alpha
Helix 79	79	D	1364	1377	Right-handed alpha
Helix 80	80	D	1394	1400	Right-handed alpha
Helix 81	81	D	1423	1430	Right-handed alpha
Helix 82	82	D	1442	1453	Right-handed alpha
Helix 83	83	D	1461	1468	Right-handed alpha
Helix 84	84	D	1474	1478	Right-handed 310

There are 31 sheets in PDB entry 2GHO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	A	193	197	anti-parallel
Strand 4	A	179	183	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	143	147	anti-parallel
Strand 3	A	96	98	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	169	170	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	21	25	anti-parallel
Strand 3	B	192	201	anti-parallel
Strand 4	B	174	184	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	141	147	anti-parallel
Strand 3	B	96	100	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	165	166	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	120	122	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	95	96	anti-parallel
Strand 3	C	113	114	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	136	first strand
Strand 2	C	392	393	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	184	186	anti-parallel
Strand 3	C	190	191	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	410	first strand
Strand 2	C	453	454	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	462	first strand
Strand 2	C	466	468	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	517	first strand
Strand 2	C	520	524	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	569	first strand
Strand 2	C	996	997	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	580	first strand
Strand 2	C	901	902	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	607	first strand
Strand 2	C	610	613	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	661	662	first strand
Strand 2	C	665	666	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	869	870	first strand
Strand 2	C	672	675	parallel
Strand 3	C	989	992	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	687	691	first strand
Strand 2	C	848	853	parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	706	713	first strand
Strand 2	C	819	827	anti-parallel
Strand 3	C	800	805	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	975	976	first strand
Strand 2	C	979	982	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	226	228	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	238	first strand
Strand 2	D	244	246	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	351	first strand
Strand 2	D	424	427	parallel
Strand 3	D	409	412	anti-parallel
Strand 4	D	453	457	anti-parallel
Strand 5	D	337	342	anti-parallel
Strand 6	D	435	437	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	479	480	first strand
Strand 2	D	485	486	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	551	552	first strand
Strand 2	D	574	576	parallel
Strand 3	D	581	582	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	816	818	first strand
Strand 2	D	909	910	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	827	830	first strand
Strand 2	D	894	898	anti-parallel
Strand 3	D	857	858	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	832	834	first strand
Strand 2	D	841	843	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	862	864	first strand
Strand 2	D	867	869	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1291	1295	first strand
Strand 2	D	1300	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GHO

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GHO