Analysis of interatomic Contacts of Structural Units in PDB entry:
2GHV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GHV entry

There are 2 chains in PDB entry 2GHV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 THR 320GLU 502
C
 THR 320GLU 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2GHV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
325 330Right-handed alpha
Helix 2
2
E
336 340Right-handed 310
Helix 3
3
E
351 355Right-handed 310
Helix 4
4
E
370 379Right-handed 310
Helix 5
5
E
392 397Right-handed 310
Helix 6
6
E
403 409Right-handed alpha
Helix 7
7
E
425 430Right-handed alpha
Helix 8
8
E
488 491Right-handed 310
Helix 9
9
C
324 330Right-handed alpha
Helix 10
10
C
336 340Right-handed 310
Helix 11
11
C
351 355Right-handed 310
Helix 12
12
C
370 379Right-handed 310
Helix 13
13
C
392 397Right-handed 310
Helix 14
14
C
403 409Right-handed alpha
Helix 15
15
C
425 430Right-handed alpha
Helix 16
16
C
488 491Right-handed 310
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There are 4 sheets in PDB entry 2GHV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
341 345first strand
Strand 2
E
382 390anti-parallel
Strand 3
E
493 501anti-parallel
Strand 4
E
418 424anti-parallel
Strand 5
E
363 367anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
439 441first strand
Strand 2
E
478 480anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
341 345first strand
Strand 2
C
382 390anti-parallel
Strand 3
C
493 500anti-parallel
Strand 4
C
418 424anti-parallel
Strand 5
C
363 367anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
439 441first strand
Strand 2
C
478 480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il