Analysis of interatomic Contacts of Structural Units in PDB entry:
2GI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GI3 entry

There is 1 chain in PDB entry 2GI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ALA 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 2GI3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 9Right-handed 310
Helix 2
2
A
10 15Right-handed alpha
Helix 3
3
A
18 23Right-handed alpha
Helix 4
4
A
24 41Right-handed alpha
Helix 5
5
A
80 84Right-handed 310
Helix 6
6
A
92 102Right-handed alpha
Helix 7
7
A
112 116Right-handed 310
Helix 8
8
A
142 151Right-handed alpha
Helix 9
9
A
166 174Right-handed alpha
Helix 10
10
A
206 218Right-handed alpha
Helix 11
11
A
252 256Right-handed 310
Helix 12
12
A
259 276Right-handed alpha
Helix 13
13
A
287 289Right-handed 310
Helix 14
14
A
290 305Right-handed alpha
Helix 15
15
A
335 381Right-handed alpha
Helix 16
16
A
401 407Right-handed alpha
Helix 17
17
A
412 419Right-handed alpha
Helix 18
18
A
445 460Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2GI3.

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
62 66parallel
Strand 4
A
156 161parallel
Strand 5
A
199 204anti-parallel
Strand 6
A
176 179anti-parallel
Strand 7
A
422 430anti-parallel
Strand 8
A
433 440anti-parallel
Strand 9
A
383 387anti-parallel
Strand 10
A
246 250parallel
Strand 11
A
279 283parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il