Analysis of interatomic Contacts of Structural Units in PDB entry:
2GIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GIB entry

There are 2 chains in PDB entry 2GIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 270PRO 366
B
 ALA 274PRO 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2GIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
270 276Right-handed alpha
Helix 2
2
A
289 296Right-handed alpha
Helix 3
3
A
297 299Right-handed 310
Helix 4
4
A
301 307Right-handed alpha
Helix 5
5
A
311 319Right-handed alpha
Helix 6
6
A
346 358Right-handed alpha
Helix 7
7
A
359 364Right-handed 310
Helix 8
8
B
289 296Right-handed alpha
Helix 9
9
B
297 299Right-handed 310
Helix 10
10
B
301 307Right-handed alpha
Helix 11
11
B
311 319Right-handed alpha
Helix 12
12
B
346 358Right-handed alpha
Helix 13
13
B
359 364Right-handed 310
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There is 1 sheet ( A) in PDB entry 2GIB.

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 325first strand
Strand 2
A
330 340anti-parallel
Strand 3
B
329 339anti-parallel
Strand 4
B
320 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il