Analysis of interatomic Contacts of Structural Units in PDB entry:
2GIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GIY entry

There are 2 chains in PDB entry 2GIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 218GLY 396
B
 VAL 219GLY 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2GIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
278 283Right-handed alpha
Helix 2
2
A
286 291Right-handed alpha
Helix 3
3
A
319 323Right-handed alpha
Helix 4
4
A
350 354Right-handed 310
Helix 5
5
B
278 283Right-handed alpha
Helix 6
6
B
286 291Right-handed alpha
Helix 7
7
B
294 296Right-handed 310
Helix 8
8
B
350 354Right-handed 310
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There are 8 sheets in PDB entry 2GIY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
245 250anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
366 376parallel
Strand 3
A
355 363anti-parallel
Strand 4
A
256 265anti-parallel
Strand 5
A
307 314anti-parallel
Strand 6
A
324 329anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
344 346anti-parallel
Strand 3
A
335 337anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
274 277parallel
Strand 3
A
384 387parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 227first strand
Strand 2
B
245 250anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 233first strand
Strand 2
B
366 376parallel
Strand 3
B
355 363anti-parallel
Strand 4
B
256 265anti-parallel
Strand 5
B
307 314anti-parallel
Strand 6
B
324 329anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 241first strand
Strand 2
B
345 346anti-parallel
Strand 3
B
335 336anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 299first strand
Strand 2
B
273 277parallel
Strand 3
B
383 387parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il