Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJ7 entry

There are 4 chains in PDB entry 2GJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 237LEU 443
F
 ARG 220LEU 390
B
 GLY 237LEU 443
E
 ARG 220LEU 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2GJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
246 252Right-handed alpha
Helix 2
2
A
309 315Right-handed alpha
Helix 3
3
A
354 360Right-handed 310
Helix 4
4
A
414 419Right-handed alpha
Helix 5
5
A
432 434Right-handed 310
Helix 6
6
F
278 283Right-handed alpha
Helix 7
7
F
286 291Right-handed alpha
Helix 8
8
F
294 296Right-handed 310
Helix 9
9
F
350 354Right-handed 310
Helix 10
10
B
246 252Right-handed alpha
Helix 11
11
B
309 315Right-handed alpha
Helix 12
12
B
354 360Right-handed 310
Helix 13
13
B
414 419Right-handed alpha
Helix 14
14
B
432 434Right-handed 310
Helix 15
15
E
278 283Right-handed alpha
Helix 16
16
E
286 291Right-handed alpha
Helix 17
17
E
294 296Right-handed 310
Helix 18
18
E
350 354Right-handed 310
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There are 20 sheets in PDB entry 2GJ7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
258 267anti-parallel
Strand 3
A
299 307anti-parallel
Strand 4
A
288 289anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
258 267anti-parallel
Strand 3
A
299 307anti-parallel
Strand 4
A
293 294anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 284first strand
Strand 2
A
274 279anti-parallel
Strand 3
A
319 324anti-parallel
Strand 4
A
332 336anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
362 372anti-parallel
Strand 3
A
404 413anti-parallel
Strand 4
A
391 393anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
362 372anti-parallel
Strand 3
A
404 413anti-parallel
Strand 4
A
397 398anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
423 428anti-parallel
Strand 4
A
436 441anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
222 227first strand
Strand 2
F
245 250anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
231 233first strand
Strand 2
F
366 376parallel
Strand 3
F
355 363anti-parallel
Strand 4
F
256 265anti-parallel
Strand 5
F
307 314anti-parallel
Strand 6
F
324 329anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
240 241first strand
Strand 2
F
344 346anti-parallel
Strand 3
F
335 337anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
298 299first strand
Strand 2
F
274 277parallel
Strand 3
F
384 387parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 243first strand
Strand 2
B
258 267anti-parallel
Strand 3
B
299 307anti-parallel
Strand 4
B
288 289anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 243first strand
Strand 2
B
258 267anti-parallel
Strand 3
B
299 307anti-parallel
Strand 4
B
293 294anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 284first strand
Strand 2
B
274 279anti-parallel
Strand 3
B
319 324anti-parallel
Strand 4
B
332 336anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 351first strand
Strand 2
B
362 372anti-parallel
Strand 3
B
404 413anti-parallel
Strand 4
B
391 393anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 351first strand
Strand 2
B
362 372anti-parallel
Strand 3
B
404 413anti-parallel
Strand 4
B
397 398anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 388first strand
Strand 2
B
378 383anti-parallel
Strand 3
B
423 428anti-parallel
Strand 4
B
436 441anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
222 227first strand
Strand 2
E
245 250anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
231 233first strand
Strand 2
E
366 376parallel
Strand 3
E
355 363anti-parallel
Strand 4
E
256 265anti-parallel
Strand 5
E
307 314anti-parallel
Strand 6
E
324 329anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
240 241first strand
Strand 2
E
344 346anti-parallel
Strand 3
E
335 337anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
298 299first strand
Strand 2
E
274 277parallel
Strand 3
E
384 387parallel
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