Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJ8 entry

There are 4 chains in PDB entry 2GJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 216MSE 376
B
 MSE 217MSE 376
C
 GLY 216MSE 376
D
 GLY 213GLY 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2GJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
228 238Right-handed alpha
Helix 2
2
A
279 295Right-handed alpha
Helix 3
3
A
312 317Right-handed alpha
Helix 4
4
A
317 324Right-handed alpha
Helix 5
5
A
336 341Right-handed alpha
Helix 6
6
A
364 376Right-handed alpha
Helix 7
7
B
228 238Right-handed alpha
Helix 8
8
B
279 296Right-handed alpha
Helix 9
9
B
312 317Right-handed alpha
Helix 10
10
B
317 324Right-handed alpha
Helix 11
11
B
336 341Right-handed alpha
Helix 12
12
B
364 376Right-handed alpha
Helix 13
13
C
228 238Right-handed alpha
Helix 14
14
C
279 296Right-handed alpha
Helix 15
15
C
312 317Right-handed alpha
Helix 16
16
C
317 323Right-handed alpha
Helix 17
17
C
336 341Right-handed alpha
Helix 18
18
C
364 376Right-handed alpha
Helix 19
19
D
228 238Right-handed alpha
Helix 20
20
D
279 296Right-handed alpha
Helix 21
21
D
312 317Right-handed alpha
Helix 22
22
D
317 324Right-handed alpha
Helix 23
23
D
336 341Right-handed alpha
Helix 24
24
D
364 377Right-handed alpha
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There are 4 sheets in PDB entry 2GJ8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 261first strand
Strand 2
A
264 270anti-parallel
Strand 3
A
217 223parallel
Strand 4
A
298 304parallel
Strand 5
A
330 335parallel
Strand 6
A
352 356parallel
Strand 7
A
345 349anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 260first strand
Strand 2
B
265 270anti-parallel
Strand 3
B
218 223parallel
Strand 4
B
298 304parallel
Strand 5
B
330 335parallel
Strand 6
B
352 356parallel
Strand 7
B
345 349anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
255 261first strand
Strand 2
C
264 270anti-parallel
Strand 3
C
217 222parallel
Strand 4
C
298 304parallel
Strand 5
C
330 335parallel
Strand 6
C
352 356parallel
Strand 7
C
345 349anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
255 261first strand
Strand 2
D
264 270anti-parallel
Strand 3
D
218 223parallel
Strand 4
D
298 304parallel
Strand 5
D
330 335parallel
Strand 6
D
354 356parallel
Strand 7
D
345 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il