Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJ9 entry

There are 4 chains in PDB entry 2GJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 216MET 376
B
 MET 217MET 376
C
 GLY 216MET 376
D
 MET 217MET 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2GJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
228 238Right-handed alpha
Helix 2
2
A
279 294Right-handed alpha
Helix 3
3
A
306 308Right-handed 310
Helix 4
4
A
312 317Right-handed alpha
Helix 5
5
A
317 324Right-handed alpha
Helix 6
6
A
336 341Right-handed alpha
Helix 7
7
A
364 376Right-handed alpha
Helix 8
8
B
228 238Right-handed alpha
Helix 9
9
B
279 296Right-handed alpha
Helix 10
10
B
306 308Right-handed 310
Helix 11
11
B
312 317Right-handed alpha
Helix 12
12
B
317 324Right-handed alpha
Helix 13
13
B
336 341Right-handed alpha
Helix 14
14
B
364 376Right-handed alpha
Helix 15
15
C
228 238Right-handed alpha
Helix 16
16
C
279 295Right-handed alpha
Helix 17
17
C
306 308Right-handed 310
Helix 18
18
C
312 317Right-handed alpha
Helix 19
19
C
317 322Right-handed alpha
Helix 20
20
C
336 341Right-handed alpha
Helix 21
21
C
364 376Right-handed alpha
Helix 22
22
D
228 238Right-handed alpha
Helix 23
23
D
279 295Right-handed alpha
Helix 24
24
D
306 308Right-handed 310
Helix 25
25
D
312 317Right-handed alpha
Helix 26
26
D
317 322Right-handed alpha
Helix 27
27
D
336 341Right-handed alpha
Helix 28
28
D
364 376Right-handed alpha
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There are 4 sheets in PDB entry 2GJ9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 261first strand
Strand 2
A
264 270anti-parallel
Strand 3
A
217 223parallel
Strand 4
A
298 304parallel
Strand 5
A
330 335parallel
Strand 6
A
352 356parallel
Strand 7
A
345 349anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 260first strand
Strand 2
B
265 270anti-parallel
Strand 3
B
218 223parallel
Strand 4
B
298 304parallel
Strand 5
B
330 335parallel
Strand 6
B
352 356parallel
Strand 7
B
345 349anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
255 261first strand
Strand 2
C
264 270anti-parallel
Strand 3
C
217 222parallel
Strand 4
C
298 304parallel
Strand 5
C
330 335parallel
Strand 6
C
352 356parallel
Strand 7
C
345 349anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
255 260first strand
Strand 2
D
265 270anti-parallel
Strand 3
D
218 223parallel
Strand 4
D
298 304parallel
Strand 5
D
330 335parallel
Strand 6
D
352 356parallel
Strand 7
D
345 349anti-parallel
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