Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJA entry

There are 2 chains in PDB entry 2GJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 215MET 382
B
 HIS 215SER 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2GJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
228 238Right-handed alpha
Helix 2
2
A
279 296Right-handed alpha
Helix 3
3
A
312 317Right-handed alpha
Helix 4
4
A
317 324Right-handed alpha
Helix 5
5
A
336 341Right-handed alpha
Helix 6
6
A
364 376Right-handed alpha
Helix 7
7
B
228 238Right-handed alpha
Helix 8
8
B
279 295Right-handed alpha
Helix 9
9
B
312 317Right-handed alpha
Helix 10
10
B
317 324Right-handed alpha
Helix 11
11
B
336 341Right-handed alpha
Helix 12
12
B
364 375Right-handed alpha
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There are 2 sheets in PDB entry 2GJA. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 261first strand
Strand 2
A
264 270anti-parallel
Strand 3
A
217 223parallel
Strand 4
A
298 304parallel
Strand 5
A
330 335parallel
Strand 6
A
352 356parallel
Strand 7
A
345 349anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 261first strand
Strand 2
B
264 270anti-parallel
Strand 3
B
217 223parallel
Strand 4
B
298 304parallel
Strand 5
B
330 335parallel
Strand 6
B
352 356parallel
Strand 7
B
345 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il