Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJE entry

There are 4 chains in PDB entry 2GJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 U 11 A 23
S
 U 40 G 44
A
 ARG 65ARG 221
D
 GLN 27ALA 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 2GJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 71Right-handed alpha
Helix 2
2
A
84 87Right-handed 310
Helix 3
3
A
129 139Right-handed alpha
Helix 4
4
A
198 217Right-handed alpha
Helix 5
5
D
40 43Right-handed 310
Helix 6
6
D
89 101Right-handed alpha
Helix 7
7
D
148 165Right-handed alpha
Helix 8
8
D
167 173Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2GJE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
89 95anti-parallel
Strand 3
A
99 107anti-parallel
Strand 4
A
118 127anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
152 158anti-parallel
Strand 3
A
166 172anti-parallel
Strand 4
A
191 197anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 36first strand
Strand 2
D
45 52anti-parallel
Strand 3
D
55 62anti-parallel
Strand 4
D
84 87anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
106 110first strand
Strand 2
D
115 121anti-parallel
Strand 3
D
124 131anti-parallel
Strand 4
D
140 147anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il