Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJJ entry

There are 2 chains in PDB entry 2GJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -1SER 253
B
 GLU -1SER 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2GJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
85 89Right-handed 310
Helix 2
2
A
162 165Right-handed 310
Helix 3
3
A
196 199Right-handed 310
Helix 4
4
A
221 225Right-handed 310
Helix 5
5
A
235 239Right-handed 310
Helix 6
6
B
85 89Right-handed 310
Helix 7
7
B
162 165Right-handed 310
Helix 8
8
B
196 199Right-handed 310
Helix 9
9
B
208 210Right-handed 310
Helix 10
10
B
221 225Right-handed 310
Helix 11
11
B
235 239Right-handed 310
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There are 11 sheets in PDB entry 2GJJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
76 81anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
108 113parallel
Strand 3
A
90 96anti-parallel
Strand 4
A
39 44anti-parallel
Strand 5
A
51 55anti-parallel
Strand 6
A
59 60anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
108 113parallel
Strand 3
A
90 96anti-parallel
Strand 4
A
103 104anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
152 159anti-parallel
Strand 3
A
212 217anti-parallel
Strand 4
A
202 207anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
248 252parallel
Strand 3
A
226 233anti-parallel
Strand 4
A
167 173anti-parallel
Strand 5
A
180 186anti-parallel
Strand 6
A
192 194anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
76 81anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
108 112parallel
Strand 3
B
91 96anti-parallel
Strand 4
B
39 44anti-parallel
Strand 5
B
51 55anti-parallel
Strand 6
B
59 60anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
108 112parallel
Strand 3
B
91 96anti-parallel
Strand 4
B
103 104anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 140first strand
Strand 2
B
152 159anti-parallel
Strand 3
B
212 217anti-parallel
Strand 4
B
202 207anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
248 252parallel
Strand 3
B
226 233anti-parallel
Strand 4
B
167 173anti-parallel
Strand 5
B
180 186anti-parallel
Strand 6
B
192 194anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
248 252parallel
Strand 3
B
226 233anti-parallel
Strand 4
B
241 244anti-parallel
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