Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJL entry

There is 1 chain in PDB entry 2GJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3ALA 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2GJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 13Right-handed alpha
Helix 2
2
A
28 38Right-handed alpha
Helix 3
3
A
51 66Right-handed alpha
Helix 4
4
A
84 95Right-handed alpha
Helix 5
5
A
107 117Right-handed alpha
Helix 6
6
A
127 137Right-handed alpha
Helix 7
7
A
159 169Right-handed alpha
Helix 8
8
A
183 194Right-handed alpha
Helix 9
9
A
201 206Right-handed alpha
Helix 10
10
A
213 223Right-handed alpha
Helix 11
11
A
232 236Right-handed 310
Helix 12
12
A
244 256Right-handed alpha
Helix 13
13
A
260 263Right-handed 310
Helix 14
14
A
264 269Right-handed alpha
Helix 15
15
A
269 280Right-handed alpha
Helix 16
16
A
290 296Right-handed 310
Helix 17
17
A
301 319Right-handed alpha
Helix 18
18
A
319 326Right-handed alpha
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There are 2 sheets in PDB entry 2GJL. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
197 200parallel
Strand 3
A
175 178parallel
Strand 4
A
141 145parallel
Strand 5
A
120 125parallel
Strand 6
A
99 104parallel
Strand 7
A
71 76parallel
Strand 8
A
43 45parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
239 242anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il