Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJM entry

There is 1 chain in PDB entry 2GJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ASN 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 2GJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 68Right-handed alpha
Helix 2
2
A
84 98Right-handed alpha
Helix 3
3
A
110 119Right-handed alpha
Helix 4
4
A
134 140Right-handed alpha
Helix 5
5
A
173 178Right-handed alpha
Helix 6
6
A
180 188Right-handed alpha
Helix 7
7
A
219 224Right-handed alpha
Helix 8
8
A
243 268Right-handed alpha
Helix 9
9
A
272 295Right-handed alpha
Helix 10
10
A
297 302Right-handed alpha
Helix 11
11
A
305 310Right-handed alpha
Helix 12
12
A
327 332Right-handed alpha
Helix 13
13
A
333 339Right-handed 310
Helix 14
14
A
362 364Right-handed 310
Helix 15
15
A
368 373Right-handed alpha
Helix 16
16
A
377 387Right-handed alpha
Helix 17
17
A
399 404Right-handed alpha
Helix 18
18
A
416 428Right-handed alpha
Helix 19
19
A
432 440Right-handed alpha
Helix 20
20
A
447 456Right-handed alpha
Helix 21
21
A
457 469Right-handed alpha
Helix 22
22
A
470 474Right-handed 310
Helix 23
23
A
475 482Right-handed alpha
Helix 24
24
A
492 509Right-handed alpha
Helix 25
25
A
521 529Right-handed alpha
Helix 26
26
A
532 541Right-handed alpha
Helix 27
27
A
572 576Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 2GJM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
388 390anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
143 144anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 344first strand
Strand 2
A
358 360anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 407first strand
Strand 2
A
413 415anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 547first strand
Strand 2
A
561 563anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il