Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJT entry

There are 2 chains in PDB entry 2GJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 914VAL 1208
B
 SER 914GLN 1201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2GJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
922 947Right-handed alpha
Helix 2
2
A
955 966Right-handed 310
Helix 3
3
A
1014 1016Right-handed 310
Helix 4
4
A
1017 1028Right-handed alpha
Helix 5
5
A
1107 1128Right-handed alpha
Helix 6
6
A
1140 1159Right-handed alpha
Helix 7
7
A
1163 1173Right-handed alpha
Helix 8
8
A
1181 1203Right-handed alpha
Helix 9
9
B
922 932Right-handed alpha
Helix 10
10
B
935 946Right-handed alpha
Helix 11
11
B
959 966Right-handed 310
Helix 12
12
B
1014 1016Right-handed 310
Helix 13
13
B
1017 1028Right-handed alpha
Helix 14
14
B
1109 1128Right-handed alpha
Helix 15
15
B
1140 1159Right-handed alpha
Helix 16
16
B
1163 1173Right-handed alpha
Helix 17
17
B
1181 1201Right-handed alpha
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There are 6 sheets in PDB entry 2GJT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
918 919first strand
Strand 2
A
1161 1162anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
978 980first strand
Strand 2
A
992 998anti-parallel
Strand 3
A
1007 1010anti-parallel
Strand 4
A
1132 1135parallel
Strand 5
A
1032 1035parallel
Strand 6
A
1088 1097parallel
Strand 7
A
1076 1085anti-parallel
Strand 8
A
1063 1072anti-parallel
Strand 9
A
1058 1060anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1040 1041first strand
Strand 2
A
1044 1045anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
918 919first strand
Strand 2
B
1161 1162anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
995 998first strand
Strand 2
B
1007 1010anti-parallel
Strand 3
B
1132 1135parallel
Strand 4
B
1032 1035parallel
Strand 5
B
1089 1097parallel
Strand 6
B
1076 1084anti-parallel
Strand 7
B
1063 1072anti-parallel
Strand 8
B
1058 1060anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1040 1041first strand
Strand 2
B
1044 1045anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il