Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJU entry

There are 4 chains in PDB entry 2GJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 252
B
 MET 1ALA 252
C
 MET 1ALA 252
D
 MET 1ALA 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 2GJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 28Right-handed alpha
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
49 64Right-handed alpha
Helix 4
4
A
71 79Right-handed alpha
Helix 5
5
A
87 93Right-handed 310
Helix 6
6
A
96 121Right-handed alpha
Helix 7
7
A
154 163Right-handed alpha
Helix 8
8
A
164 166Right-handed 310
Helix 9
9
A
225 236Right-handed alpha
Helix 10
10
A
239 249Right-handed alpha
Helix 11
11
B
13 30Right-handed alpha
Helix 12
12
B
49 64Right-handed alpha
Helix 13
13
B
71 79Right-handed alpha
Helix 14
14
B
87 93Right-handed 310
Helix 15
15
B
96 120Right-handed alpha
Helix 16
16
B
154 163Right-handed alpha
Helix 17
17
B
164 166Right-handed 310
Helix 18
18
B
226 236Right-handed alpha
Helix 19
19
B
239 249Right-handed alpha
Helix 20
20
C
13 30Right-handed alpha
Helix 21
21
C
49 64Right-handed alpha
Helix 22
22
C
71 79Right-handed alpha
Helix 23
23
C
87 93Right-handed 310
Helix 24
24
C
96 121Right-handed alpha
Helix 25
25
C
154 163Right-handed alpha
Helix 26
26
C
164 166Right-handed 310
Helix 27
27
C
225 236Right-handed alpha
Helix 28
28
C
239 249Right-handed alpha
Helix 29
29
D
13 29Right-handed alpha
Helix 30
30
D
49 64Right-handed alpha
Helix 31
31
D
71 79Right-handed alpha
Helix 32
32
D
87 93Right-handed 310
Helix 33
33
D
96 121Right-handed alpha
Helix 34
34
D
154 163Right-handed alpha
Helix 35
35
D
164 166Right-handed 310
Helix 36
36
D
225 236Right-handed alpha
Helix 37
37
D
239 249Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2GJU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
33 40parallel
Strand 3
A
2 8parallel
Strand 4
A
205 211anti-parallel
Strand 5
A
217 222anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
170 173parallel
Strand 4
A
187 192parallel
Strand 5
A
179 184anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
33 40parallel
Strand 3
B
2 8parallel
Strand 4
B
205 211anti-parallel
Strand 5
B
217 222anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
132 137anti-parallel
Strand 3
B
170 173parallel
Strand 4
B
187 191parallel
Strand 5
B
180 184anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 68first strand
Strand 2
C
33 40parallel
Strand 3
C
2 8parallel
Strand 4
C
205 211anti-parallel
Strand 5
C
217 222anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 129first strand
Strand 2
C
132 137anti-parallel
Strand 3
C
170 173parallel
Strand 4
C
187 191parallel
Strand 5
C
180 184anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 69first strand
Strand 2
D
33 40parallel
Strand 3
D
2 8parallel
Strand 4
D
205 211anti-parallel
Strand 5
D
217 222anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 129first strand
Strand 2
D
132 137anti-parallel
Strand 3
D
170 173parallel
Strand 4
D
187 191parallel
Strand 5
D
180 184anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il