Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJV entry

There are 6 chains in PDB entry 2GJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1GLN 134
B
 ASN -1GLN 134
C
 ASN -1GLN 134
D
 ASN -1GLN 134
E
 ASN -1GLN 134
F
 ASN -1GLN 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2GJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 18Right-handed alpha
Helix 2
2
A
76 92Right-handed alpha
Helix 3
3
A
113 117Right-handed 310
Helix 4
4
B
2 18Right-handed alpha
Helix 5
5
B
76 92Right-handed alpha
Helix 6
6
B
113 117Right-handed 310
Helix 7
7
C
2 18Right-handed alpha
Helix 8
8
C
76 92Right-handed alpha
Helix 9
9
C
113 117Right-handed 310
Helix 10
10
D
2 18Right-handed alpha
Helix 11
11
D
76 92Right-handed alpha
Helix 12
12
D
113 117Right-handed 310
Helix 13
13
E
2 18Right-handed alpha
Helix 14
14
E
76 92Right-handed alpha
Helix 15
15
E
113 117Right-handed 310
Helix 16
16
F
2 18Right-handed alpha
Helix 17
17
F
76 92Right-handed alpha
Helix 18
18
F
113 117Right-handed 310
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There are 6 sheets in PDB entry 2GJV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 25first strand
Strand 2
D
41 51parallel
Strand 3
D
61 74anti-parallel
Strand 4
D
118 131anti-parallel
Strand 5
D
104 112anti-parallel
Strand 6
C
40 51anti-parallel
Strand 7
C
21 24parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 25first strand
Strand 2
D
41 51parallel
Strand 3
D
61 74anti-parallel
Strand 4
D
118 131anti-parallel
Strand 5
D
104 112anti-parallel
Strand 6
C
40 51anti-parallel
Strand 7
C
61 74anti-parallel
Strand 8
C
118 131anti-parallel
Strand 9
C
104 112anti-parallel
Strand 10
B
40 51anti-parallel
Strand 11
B
21 25parallel
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There are 15 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 25first strand
Strand 2
D
41 51parallel
Strand 3
D
61 74anti-parallel
Strand 4
D
118 131anti-parallel
Strand 5
D
104 112anti-parallel
Strand 6
C
40 51anti-parallel
Strand 7
C
61 74anti-parallel
Strand 8
C
118 131anti-parallel
Strand 9
C
104 112anti-parallel
Strand 10
B
40 51anti-parallel
Strand 11
B
61 74anti-parallel
Strand 12
B
118 131anti-parallel
Strand 13
B
104 112anti-parallel
Strand 14
A
40 51anti-parallel
Strand 15
A
21 24parallel
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There are 19 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 25first strand
Strand 2
D
41 51parallel
Strand 3
D
61 74anti-parallel
Strand 4
D
118 131anti-parallel
Strand 5
D
104 112anti-parallel
Strand 6
C
40 51anti-parallel
Strand 7
C
61 74anti-parallel
Strand 8
C
118 131anti-parallel
Strand 9
C
104 112anti-parallel
Strand 10
B
40 51anti-parallel
Strand 11
B
61 74anti-parallel
Strand 12
B
118 131anti-parallel
Strand 13
B
104 112anti-parallel
Strand 14
A
40 51anti-parallel
Strand 15
A
61 74anti-parallel
Strand 16
A
118 131anti-parallel
Strand 17
A
104 112anti-parallel
Strand 18
F
40 51anti-parallel
Strand 19
F
21 24parallel
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There are 23 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 25first strand
Strand 2
D
41 51parallel
Strand 3
D
61 74anti-parallel
Strand 4
D
118 131anti-parallel
Strand 5
D
104 112anti-parallel
Strand 6
C
40 51anti-parallel
Strand 7
C
61 74anti-parallel
Strand 8
C
118 131anti-parallel
Strand 9
C
104 112anti-parallel
Strand 10
B
40 51anti-parallel
Strand 11
B
61 74anti-parallel
Strand 12
B
118 131anti-parallel
Strand 13
B
104 112anti-parallel
Strand 14
A
40 51anti-parallel
Strand 15
A
61 74anti-parallel
Strand 16
A
118 131anti-parallel
Strand 17
A
104 112anti-parallel
Strand 18
F
40 51anti-parallel
Strand 19
F
61 74anti-parallel
Strand 20
F
118 131anti-parallel
Strand 21
F
104 112anti-parallel
Strand 22
E
40 51anti-parallel
Strand 23
E
21 25parallel
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There are 26 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 25first strand
Strand 2
D
41 51parallel
Strand 3
D
61 74anti-parallel
Strand 4
D
118 131anti-parallel
Strand 5
D
104 112anti-parallel
Strand 6
C
40 51anti-parallel
Strand 7
C
61 74anti-parallel
Strand 8
C
118 131anti-parallel
Strand 9
C
104 112anti-parallel
Strand 10
B
40 51anti-parallel
Strand 11
B
61 74anti-parallel
Strand 12
B
118 131anti-parallel
Strand 13
B
104 112anti-parallel
Strand 14
A
40 51anti-parallel
Strand 15
A
61 74anti-parallel
Strand 16
A
118 131anti-parallel
Strand 17
A
104 112anti-parallel
Strand 18
F
40 51anti-parallel
Strand 19
F
61 74anti-parallel
Strand 20
F
118 131anti-parallel
Strand 21
F
104 112anti-parallel
Strand 22
E
40 51anti-parallel
Strand 23
E
61 74anti-parallel
Strand 24
E
118 131anti-parallel
Strand 25
E
104 112anti-parallel
Strand 26
D
41 51anti-parallel
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