Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GJW entry

There are 10 chains in PDB entry 2GJW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	G 3	C 20
F	U 3	A 13
H	A 15	C 21
I	G 3	A 21
J	U 3	A 13
L	A 15	C 21
A	HIS 1	VAL 308
B	ILE 4	VAL 307
C	HIS 1	VAL 307
D	ILE 5	VAL 308

There are 44 helices in PDB entry 2GJW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	21	Right-handed alpha
Helix 2	2	A	34	44	Right-handed alpha
Helix 3	3	A	51	63	Right-handed alpha
Helix 4	4	A	65	78	Right-handed alpha
Helix 5	5	A	106	117	Right-handed alpha
Helix 6	6	A	166	171	Right-handed alpha
Helix 7	7	A	186	195	Right-handed alpha
Helix 8	8	A	204	216	Right-handed alpha
Helix 9	9	A	218	232	Right-handed alpha
Helix 10	10	A	240	243	Right-handed 310
Helix 11	11	A	275	288	Right-handed alpha
Helix 12	12	B	14	19	Right-handed alpha
Helix 13	13	B	33	43	Right-handed alpha
Helix 14	14	B	50	62	Right-handed alpha
Helix 15	15	B	64	78	Right-handed alpha
Helix 16	16	B	105	116	Right-handed alpha
Helix 17	17	B	165	170	Right-handed alpha
Helix 18	18	B	185	194	Right-handed alpha
Helix 19	19	B	203	215	Right-handed alpha
Helix 20	20	B	217	231	Right-handed alpha
Helix 21	21	B	239	242	Right-handed 310
Helix 22	22	B	274	287	Right-handed alpha
Helix 23	23	C	14	19	Right-handed alpha
Helix 24	24	C	33	43	Right-handed alpha
Helix 25	25	C	50	62	Right-handed alpha
Helix 26	26	C	64	78	Right-handed alpha
Helix 27	27	C	105	116	Right-handed alpha
Helix 28	28	C	165	170	Right-handed alpha
Helix 29	29	C	185	194	Right-handed alpha
Helix 30	30	C	203	215	Right-handed alpha
Helix 31	31	C	217	231	Right-handed alpha
Helix 32	32	C	239	242	Right-handed 310
Helix 33	33	C	274	287	Right-handed alpha
Helix 34	34	D	15	21	Right-handed alpha
Helix 35	35	D	34	44	Right-handed alpha
Helix 36	36	D	51	63	Right-handed alpha
Helix 37	37	D	65	78	Right-handed alpha
Helix 38	38	D	106	117	Right-handed alpha
Helix 39	39	D	166	171	Right-handed alpha
Helix 40	40	D	186	195	Right-handed alpha
Helix 41	41	D	204	216	Right-handed alpha
Helix 42	42	D	218	232	Right-handed alpha
Helix 43	43	D	240	243	Right-handed 310
Helix 44	44	D	275	287	Right-handed alpha

There are 16 sheets in PDB entry 2GJW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	30	33	anti-parallel
Strand 3	A	25	27	anti-parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	86	first strand
Strand 2	A	89	91	anti-parallel
Strand 3	A	95	100	anti-parallel
Strand 4	A	121	125	parallel
Strand 5	A	131	137	anti-parallel
Strand 6	A	299	306	anti-parallel
Strand 7	A	291	296	anti-parallel
Strand 8	A	263	267	parallel
Strand 9	A	246	249	anti-parallel
Strand 10	A	235	238	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	273	274	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	181	185	anti-parallel
Strand 3	A	160	163	anti-parallel
Strand 4	A	152	157	anti-parallel
Strand 5	A	198	200	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	29	32	anti-parallel
Strand 3	B	24	26	anti-parallel

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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	88	90	anti-parallel
Strand 3	B	94	99	anti-parallel
Strand 4	B	120	124	parallel
Strand 5	B	130	136	anti-parallel
Strand 6	B	298	305	anti-parallel
Strand 7	B	290	295	anti-parallel
Strand 8	B	262	266	parallel
Strand 9	B	245	248	anti-parallel
Strand 10	B	234	237	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	272	273	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	184	first strand
Strand 2	B	159	162	anti-parallel
Strand 3	B	151	156	anti-parallel
Strand 4	B	197	199	parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	29	32	anti-parallel
Strand 3	C	24	26	anti-parallel

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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	88	90	anti-parallel
Strand 3	C	94	99	anti-parallel
Strand 4	C	120	124	parallel
Strand 5	C	130	136	anti-parallel
Strand 6	C	298	305	anti-parallel
Strand 7	C	290	295	anti-parallel
Strand 8	C	262	266	parallel
Strand 9	C	245	248	anti-parallel
Strand 10	C	234	237	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	104	first strand
Strand 2	C	272	273	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	181	184	anti-parallel
Strand 3	C	159	162	anti-parallel
Strand 4	C	151	155	anti-parallel
Strand 5	C	197	199	parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	30	33	anti-parallel
Strand 3	D	25	27	anti-parallel

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There are 10 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	89	91	anti-parallel
Strand 3	D	95	100	anti-parallel
Strand 4	D	121	125	parallel
Strand 5	D	131	136	anti-parallel
Strand 6	D	299	306	anti-parallel
Strand 7	D	291	296	anti-parallel
Strand 8	D	263	267	parallel
Strand 9	D	246	249	anti-parallel
Strand 10	D	235	238	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	273	274	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	181	185	anti-parallel
Strand 3	D	160	163	anti-parallel
Strand 4	D	152	157	anti-parallel
Strand 5	D	198	200	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GJW

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJW