Analysis of interatomic Contacts of Structural Units in PDB entry:
2GK6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GK6 entry

There are 2 chains in PDB entry 2GK6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 293MET 911
B
 GLY 293MET 911
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 2GK6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
298 324Right-handed alpha
Helix 2
2
A
417 433Right-handed alpha
Helix 3
3
A
439 446Right-handed alpha
Helix 4
4
A
472 484Right-handed alpha
Helix 5
5
A
497 511Right-handed alpha
Helix 6
6
A
523 536Right-handed alpha
Helix 7
7
A
547 551Right-handed 310
Helix 8
8
A
560 566Right-handed alpha
Helix 9
9
A
571 579Right-handed alpha
Helix 10
10
A
588 609Right-handed alpha
Helix 11
11
A
618 626Right-handed 310
Helix 12
12
A
637 641Right-handed 310
Helix 13
13
A
642 651Right-handed alpha
Helix 14
14
A
672 679Right-handed alpha
Helix 15
15
A
683 691Right-handed alpha
Helix 16
16
A
705 717Right-handed alpha
Helix 17
17
A
727 731Right-handed 310
Helix 18
18
A
767 782Right-handed alpha
Helix 19
19
A
786 788Right-handed 310
Helix 20
20
A
796 810Right-handed alpha
Helix 21
21
A
814 821Right-handed alpha
Helix 22
22
A
825 830Right-handed alpha
Helix 23
23
A
855 863Right-handed alpha
Helix 24
24
A
875 880Right-handed alpha
Helix 25
25
A
882 895Right-handed alpha
Helix 26
26
A
902 906Right-handed 310
Helix 27
27
B
298 323Right-handed alpha
Helix 28
28
B
417 433Right-handed alpha
Helix 29
29
B
439 446Right-handed alpha
Helix 30
30
B
472 483Right-handed alpha
Helix 31
31
B
497 511Right-handed alpha
Helix 32
32
B
523 536Right-handed alpha
Helix 33
33
B
560 566Right-handed alpha
Helix 34
34
B
571 579Right-handed alpha
Helix 35
35
B
588 609Right-handed alpha
Helix 36
36
B
618 626Right-handed 310
Helix 37
37
B
637 641Right-handed 310
Helix 38
38
B
642 651Right-handed alpha
Helix 39
39
B
672 678Right-handed alpha
Helix 40
40
B
683 692Right-handed alpha
Helix 41
41
B
709 717Right-handed alpha
Helix 42
42
B
767 782Right-handed alpha
Helix 43
43
B
786 788Right-handed 310
Helix 44
44
B
796 810Right-handed alpha
Helix 45
45
B
814 820Right-handed alpha
Helix 46
46
B
825 830Right-handed alpha
Helix 47
47
B
850 854Right-handed 310
Helix 48
48
B
855 863Right-handed alpha
Helix 49
49
B
875 880Right-handed alpha
Helix 50
50
B
882 895Right-handed alpha
Helix 51
51
B
902 906Right-handed 310
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There are 10 sheets in PDB entry 2GK6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
409 413anti-parallel
Strand 3
A
361 366anti-parallel
Strand 4
A
375 382anti-parallel
Strand 5
A
390 395anti-parallel
Strand 6
A
341 346anti-parallel
Strand 7
A
331 335anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
612 616parallel
Strand 3
A
517 521parallel
Strand 4
A
632 635parallel
Strand 5
A
656 661parallel
Strand 6
A
487 491parallel
Strand 7
A
696 697parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 701first strand
Strand 2
A
722 723parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 750first strand
Strand 2
A
866 874parallel
Strand 3
A
834 841parallel
Strand 4
A
790 793parallel
Strand 5
A
822 824parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
755 756first strand
Strand 2
A
765 766anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
409 413anti-parallel
Strand 3
B
361 366anti-parallel
Strand 4
B
375 382anti-parallel
Strand 5
B
390 395anti-parallel
Strand 6
B
341 346anti-parallel
Strand 7
B
331 335anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 543first strand
Strand 2
B
612 616parallel
Strand 3
B
517 521parallel
Strand 4
B
632 635parallel
Strand 5
B
656 661parallel
Strand 6
B
487 491parallel
Strand 7
B
696 697parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
700 701first strand
Strand 2
B
722 723parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
822 824first strand
Strand 2
B
790 793parallel
Strand 3
B
834 841parallel
Strand 4
B
866 874parallel
Strand 5
B
746 750parallel
Strand 6
B
898 899parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
755 756first strand
Strand 2
B
765 766anti-parallel
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