Analysis of interatomic Contacts of Structural Units in PDB entry:
2GK7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GK7 entry

There is 1 chain in PDB entry 2GK7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 295GLU 908
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2GK7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
298 322Right-handed alpha
Helix 2
2
A
417 433Right-handed alpha
Helix 3
3
A
438 446Right-handed alpha
Helix 4
4
A
472 483Right-handed alpha
Helix 5
5
A
497 512Right-handed alpha
Helix 6
6
A
523 536Right-handed alpha
Helix 7
7
A
546 550Right-handed 310
Helix 8
8
A
556 559Right-handed 310
Helix 9
9
A
560 567Right-handed alpha
Helix 10
10
A
573 582Right-handed alpha
Helix 11
11
A
589 610Right-handed alpha
Helix 12
12
A
618 626Right-handed 310
Helix 13
13
A
637 641Right-handed 310
Helix 14
14
A
642 651Right-handed alpha
Helix 15
15
A
672 679Right-handed alpha
Helix 16
16
A
683 691Right-handed alpha
Helix 17
17
A
705 717Right-handed alpha
Helix 18
18
A
727 731Right-handed 310
Helix 19
19
A
767 784Right-handed alpha
Helix 20
20
A
786 788Right-handed 310
Helix 21
21
A
796 810Right-handed alpha
Helix 22
22
A
814 819Right-handed alpha
Helix 23
23
A
826 830Right-handed 310
Helix 24
24
A
855 864Right-handed alpha
Helix 25
25
A
875 880Right-handed alpha
Helix 26
26
A
882 895Right-handed alpha
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There are 6 sheets in PDB entry 2GK7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 364first strand
Strand 2
A
411 413anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 382first strand
Strand 2
A
392 394anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
612 616parallel
Strand 3
A
517 521parallel
Strand 4
A
632 635parallel
Strand 5
A
656 661parallel
Strand 6
A
487 491parallel
Strand 7
A
696 697parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 701first strand
Strand 2
A
722 723parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 750first strand
Strand 2
A
866 874parallel
Strand 3
A
834 840parallel
Strand 4
A
790 793parallel
Strand 5
A
822 824parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
755 757first strand
Strand 2
A
764 766anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il