Analysis of interatomic Contacts of Structural Units in PDB entry:
2GKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GKO entry

There is 1 chain in PDB entry 2GKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2GKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 15Right-handed alpha
Helix 2
2
A
44 46Right-handed 310
Helix 3
3
A
70 81Right-handed alpha
Helix 4
4
A
111 130Right-handed alpha
Helix 5
5
A
145 158Right-handed alpha
Helix 6
6
A
210 214Right-handed 310
Helix 7
7
A
247 266Right-handed alpha
Helix 8
8
A
270 284Right-handed alpha
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There are 3 sheets in PDB entry 2GKO. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
97 102parallel
Strand 4
A
29 34parallel
Strand 5
A
133 137parallel
Strand 6
A
161 165parallel
Strand 7
A
186 196parallel
Strand 8
A
199 202anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
97 102parallel
Strand 4
A
29 34parallel
Strand 5
A
133 137parallel
Strand 6
A
161 165parallel
Strand 7
A
186 196parallel
Strand 8
A
226 229parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
242 245anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il